rs251261081 SNP Detail

Summary

• ID
  rs251261081
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:103215724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGTATTA AAGGGGAAAT
  TTCTCACACC TGCAAGGTAT ATTTTCCATT ACATGTTTGA AAATCTAGAA CGAATGTGGT
  TTGTAATCCA CACGTATTAA AATAAAAACA GACATATCAA ACATCTGATA GACAAGCATG
  GAACCTGGGA CCTGTTTTGT TTTGTTTTTT TACAACCACA GAGACTGTCA ACACTTTTTA
  W
  AAAAATTACT TATTAAACCT AATGTCATTC CATTATTTAT GAGCATCAAA TGGTAATTTG
  ATCAACATAT GCAAATGATT GCCTCTCTGA GATAGATTAA TGCAGCCGTG AATATCTGAG
  TAGTTTATAA TATTCTTCTG GGTCATTTCA AAGATACTGA TGAGAGAGGC TCCACTGTTT
  GGTACAGTCA TCAAATTCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392294172	MGP_WTSI_14_103377505	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	T	T	A	A	T	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251261081					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	T	T	A	A	T	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392294172	MGP_WTSI_14_103377505	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:103215724 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kctd12	potassium channel tetramerisation domain containing 12			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr404259	regulatory region 404259			1321 bp upstream
Rr496944	regulatory region 496944			384 bp proximal
Rr496945	regulatory region 496945			1400 bp proximal
Tssr126949	transcription start site region 126949			1820 bp upstream
Tssr130053	transcription start site region 130053			362 bp upstream
Tssr130054	transcription start site region 130054			317 bp upstream
Tssr130055	transcription start site region 130055			151 bp upstream
Tssr130056	transcription start site region 130056			270 bp downstream
Tssr130057	transcription start site region 130057			375 bp downstream
Tssr130058	transcription start site region 130058			1458 bp downstream
Tssr130059	transcription start site region 130059			1486 bp downstream