rs251263048 SNP Detail

Summary

• ID
  rs251263048
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:52227886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACACATA CGTAGCAGAG
  GACTACCTGG TCTGACTTCA ATGAGAGAAG ATGATCTAAC CGTCAAGAGA CTTAAGGTCC
  CAGGGAGTGG GGAGGTCTGG TGGGGTCTGG ATTAGGGGTG GGGACATCCT CTTGGAGATG
  GGGGAGGAGG AATGGGATGA GGAACAGTCA GAGGAGGGAC CAGAAAGGGG ATAATGACTG
  R
  ACTGTAAAAA AAGATTAAAG AATAATAATT TAAAAATAAA AAAAATAAAA AGGCCTTAGA
  AATTAAAAAA AATATATAGT GTCTAAAATG TGTGGGGCTC AGTGAGTAAG ATGCTTGCAC
  ACAAGAACTT AAATTTGTAT ACCCAGGATT CAAGTAAAAT CAAAGCATGG TAGAACACAT
  TTGTACTGTT TGAAGAAGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325178522	CHEV_16_52407636	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251263048					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:52227886 () rs orientation: forward

Symbol	Name	Function Class
Alcam	activated leukocyte cell adhesion molecule	within coordinates
Tssr141455	transcription start site region 141455	787 bp upstream
Tssr141456	transcription start site region 141456	73 bp downstream
Tssr141457	transcription start site region 141457	100 bp downstream
Tssr141458	transcription start site region 141458	154 bp downstream
Tssr141459	transcription start site region 141459	177 bp downstream
Tssr141460	transcription start site region 141460	211 bp downstream
Tssr141461	transcription start site region 141461	235 bp downstream
Tssr141462	transcription start site region 141462	289 bp downstream