rs251264546 SNP Detail

Summary

• ID
  rs251264546
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126047660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCC CACACACACA CCCAGCATGC
  R
  TGGGGACACT CAGAGCCTTG ACCCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322450803	CHEV_7_133592002	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251264546					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126047660 () rs orientation: forward

Symbol	Name	Function Class
Atp2a1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	within coordinates
Tssr2394	transcription start site region 2394	848 bp upstream
Tssr69023	transcription start site region 69023	574 bp downstream
Tssr74664	transcription start site region 74664	1900 bp upstream
Tssr74665	transcription start site region 74665	1574 bp upstream
Tssr74666	transcription start site region 74666	1515 bp upstream
Tssr74667	transcription start site region 74667	1487 bp upstream
Tssr74668	transcription start site region 74668	1284 bp upstream
Tssr74669	transcription start site region 74669	1270 bp upstream
Tssr74670	transcription start site region 74670	1014 bp upstream
Tssr74671	transcription start site region 74671	993 bp upstream
Tssr74672	transcription start site region 74672	976 bp upstream
Tssr74673	transcription start site region 74673	837 bp upstream
Tssr74674	transcription start site region 74674	809 bp upstream
Tssr74675	transcription start site region 74675	795 bp upstream
Tssr74676	transcription start site region 74676	586 bp upstream
Tssr74677	transcription start site region 74677	543 bp upstream
Tssr74678	transcription start site region 74678	522 bp upstream
Tssr74679	transcription start site region 74679	502 bp upstream
Tssr74680	transcription start site region 74680	484 bp upstream
Tssr74681	transcription start site region 74681	458 bp upstream
Tssr74682	transcription start site region 74682	447 bp upstream
Tssr74683	transcription start site region 74683	244 bp upstream
Tssr74684	transcription start site region 74684	142 bp upstream
Tssr74685	transcription start site region 74685	106 bp upstream
Tssr74686	transcription start site region 74686	106 bp downstream
Tssr74687	transcription start site region 74687	160 bp downstream
Tssr74688	transcription start site region 74688	264 bp downstream
Tssr74689	transcription start site region 74689	333 bp downstream
Tssr74690	transcription start site region 74690	754 bp downstream
Tssr74691	transcription start site region 74691	797 bp downstream
Tssr74692	transcription start site region 74692	1664 bp downstream
Tssr74693	transcription start site region 74693	1690 bp downstream
Tssr74694	transcription start site region 74694	1813 bp downstream