rs251274167 SNP Detail

Summary

• ID
  rs251274167
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96511380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGATGAG AGGCTCCCAA
  AGAGCAGTTC TGAGCTTAAC AGCTCATCTC CAGGCTAACA GGGAGCTACC AGGTTCTCCC
  CAAGGTTTCT CAGTGTGGTA GAAAGGACTG GTGACTTCAA CACTCGCAAA CTGCTTAGAT
  TCTTCATTGT CAAACTGCCA TCATCCCATT TCTGTGACTT CAGCACCTGC TAATGTTTCC
  R
  CCACTTCTCA TCACCTTACA AAGCCCACGT GTCAGTTTCA GGAAACACAG AAGGGCATTT
  CCTTACAAGG ATCCGGAGGG CAACCAACCT TGATCATACC AGCTAAAAGA AGGGCAAGAA
  ATGGGAGGGG TGTTCTTGAT TTCAGTATGT ATCCTTGTGA AACAGTCACA ACATGACCTG
  AGCTATAAGA TGAGCAATAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323111045	CHEV_9_96529746	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251274167					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96511380 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22167	CpG island 22167	1116 bp proximal
Rasa2	RAS p21 protein activator 2	within coordinates
Tssr86611	transcription start site region 86611	1666 bp upstream
Tssr90973	transcription start site region 90973	1298 bp downstream
Tssr90974	transcription start site region 90974	1544 bp downstream
Tssr90975	transcription start site region 90975	1855 bp downstream