rs251276178 SNP Detail

Summary

• ID
  rs251276178
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135504545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCATTCT GTGTGCCCTA
  CTTCCAAGTT AGACATAAGT GAACTTTTCC ATGGATGTAG TGGGTGCGTG CTTATAAACC
  CAGGCGGAGC AAGTTATTGA ACTTGCTCAG CTACATGAGA CCCAGGTCTT GAAAAACGAG
  GGCAGGAGGT GAGGGAGACG AGAGGGGAAG AAGGGAGGGG AAGGGGAAGG AGAGGGGAAG
  R
  AGAGAGGAGA GCAAAGAGAG GAGAGGAGAG GGGAGGGGAG GGGAGGGAAG GGGAGGGGAG
  AGGAGGGGAG GGGAGGGGTT CTAGTTCTGG GGCTGTGCTG TGGGTGGTCT GGTTCATGCT
  TTGTGGGGTG GTGGTTGGCG TTTAGCCGGA CACACATGCT CCAGCTAAGG CTGAGGAAGA
  CTAATCCCTG ATAAAGACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	JF1/MsJ	LP/J	MOLF/EiJ	PWK/PhJ	SEA/GnJ
ss351544857	MGP_WTSI_1_137473384	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	JF1/MsJ	LP/J	MOLF/EiJ	PWK/PhJ	SEA/GnJ
rs251276178					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351544857	MGP_WTSI_1_137473384	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135504545 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nav1	neuron navigator 1			Intron
				Noncoding-Transcript-Variant
Rr419193	regulatory region 419193			1937 bp distal
Rr419194	regulatory region 419194			1151 bp distal
Rr419195	regulatory region 419195			1038 bp proximal