rs251279092 SNP Detail

Summary

• ID
  rs251279092
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:77790637 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTAGACTG GAGGCACGTG
  CCAACATGCT ACAGACCCTT GAAACTTGCC GCTTCTGGTT GCACGTGATG TTCCCTGTTT
  CCAGTCTGTG TACTGCTGCC CTCCCCACAG GCTGCTATTC TCTTGCACGC AGCCTTGCTC
  ACTCATCCCT CAGTATCCTC TTCCTGACTT TTCTACCCAC CAGCTCACCT TTCTGATCAA
  R
  CATTTGCGTT GTAGACATAC TATGTGTCTT CCCCGGGGCC GGTTAGCCCC TGCTTGGCAA
  GCTGGTGGTC CGTTGGAATT TTTTGAGAAG TTCTTCTTGA CTCAGTCACT GAGCTGACCC
  AACCCCACAC CTCAACCCTG GCTGAGCCTG GGCCTGCTCT GTCTGATGTT AAGTAGGAGT
  TGGTGTCCGA GGGCCTCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394641325	MGP_WTSI_15_77736867	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251279092					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394641325	MGP_WTSI_15_77736867	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:77790637 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7276	CpG island 7276	815 bp distal
Gm62342	predicted gene, 62342	within coordinates
Rr243	regulatory region 243	474 bp distal
Rr505143	regulatory region 505143	45 bp distal
Rr505144	regulatory region 505144	86 bp proximal
Rr505145	regulatory region 505145	356 bp proximal
Rr505146	regulatory region 505146	1068 bp proximal
Tssr131883	transcription start site region 131883	841 bp downstream
Tssr131884	transcription start site region 131884	803 bp downstream
Tssr131885	transcription start site region 131885	396 bp downstream
Tssr135141	transcription start site region 135141	1038 bp upstream