rs251281212 SNP Detail

Summary

• ID
  rs251281212
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167894106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTTATAT TCTTTACACA
  GGGGTCTTAA ACCAGGCAAG GCAATTAGCA CATCTAATCC CAGCACACAT GAAGCTAGGC
  AGGAAGACCA GAGTTCAAGA CCAGCGTGGG CTACATAAGA CCCTGCTTCT AAATCAGAAA
  AGCTGAGGGT GGCAGTGGGC TTCTGTAATC CCAGAATTTA AGAGGGGGAA ACAGGAGGAT
  Y
  AGAAGTTCAA GGACAGCTTT AGCTACATAG CAACTCTGAG GCTAGCCTAA GCTATATGAG
  ACCCTGTCTC AAAAAGAAAA CAAAGAAAAG ACCAGTGCTT TTAGATGTTG CCCAAGCTGG
  CCTTGAACTC CTAGATTCAA GTGGATTTCC CAAGAATCTG GACTGCACTG TGTAGCATGG
  CTCTCAGCCA ATAGATTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356517463	MGP_WTSI_2_167877686	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251281212					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356517463	MGP_WTSI_2_167877686	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167894106 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12760	CpG island 12760	1276 bp distal
Gm57439	predicted gene, 57439	1759 bp upstream
Rr406967	regulatory region 406967	1316 bp distal
Rr570860	regulatory region 570860	1830 bp distal
Rr570861	regulatory region 570861	1973 bp distal
Rr570862	regulatory region 570862	1271 bp distal
Rr570863	regulatory region 570863	591 bp proximal
Rr570864	regulatory region 570864	688 bp proximal
Tssr27821	transcription start site region 27821	1822 bp upstream
Tssr27822	transcription start site region 27822	1786 bp upstream
Tssr27823	transcription start site region 27823	1758 bp upstream
Tssr27824	transcription start site region 27824	234 bp upstream