rs251288408 SNP Detail

Summary

• ID
  rs251288408
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:143099503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAGCAGG GACTGCTGCT
  TCTCTTGTCC TTGTAGATGG CTCTCAAGAA AGTGGAGCTG GTCACCACTG CGGTGTGCAG
  TCATATTGTT CCACCACCAG ATAGATACCT CAGCTGCTTT TGGTCCAAGT CTACTTAGCT
  CTATAGTCGA CTTATTGAAT ATTGGTGGGT GGCTTAGCTT AGTTGGTCTG GTTACCTGGC
  Y
  GAGGCTCTCA TCCAATCTTG GGTAACTTGA TTACAGCTGT GTGCTACTGT GCGGAGCTGA
  TAAAGAACAA TTTAAAACAC GTGCGTTACC TTTAAGTATT TGATTCTCTA TGGGGGTGGT
  GCATGCGCTA TGTTGAGCAT GTCTCAGGCT GGAAAACAAC TTATAGGAGT TGGTTTCCTA
  CCCCCATCAC ATGGGTCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss404807557	MGP_WTSI_X_140751050	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	C	T	T	T	C	T	T	C	C	T	T	C	T	T	T	T	T	T	T	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs251288408					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	C	T	T	T	C	T	T	C	C	T	T	C	T	T	T	T	T	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404807557	MGP_WTSI_X_140751050	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:143099503 () rs orientation: forward

Symbol	Name	Function Class
Alg13	asparagine-linked glycosylation 13	1459 bp upstream
Cpgi22981	CpG island 22981	1281 bp proximal
Gm33235	predicted gene, 33235	within coordinates
Rr8342	regulatory region 8342	897 bp proximal
Rr9316	regulatory region 9316	1503 bp distal
Rr9317	regulatory region 9317	903 bp distal
Rr9318	regulatory region 9318	within coordinates
Tssr162274	transcription start site region 162274	1292 bp upstream
Tssr162275	transcription start site region 162275	1484 bp upstream
Tssr162276	transcription start site region 162276	1531 bp upstream
Tssr162277	transcription start site region 162277	1558 bp upstream