rs251298601 SNP Detail

Summary

• ID
  rs251298601
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:49686262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGATTAG GCAGGAACCA
  TGGGGACGCA GCCTCATCCA GAGAGAGCCG GGGTCAGTTT AAAATCCTGG ATCCTCAGAC
  AGAATCTTAG GACTCCTGGG CATCCTTTGG CAACGTGTGT GAAAGGTTGC TTCAGGCGTT
  TCTGGACACT GAAATGAAAC AAATGTATAA GTTTTGTCAG ATTCAACCCG CCCCCCGCCC
  S
  CCCCCCCCCC CCGTTTGAGT TCTTGTAGAT CTTTAGCCAC CGGTGGCTTT AGAACCAGAC
  TTTAGCAAGA GACCTGAAAC TACTTGAGCT CCAGGGCTTT CCTTGCTGAG CCTCTCAGAT
  GGCCCTGCAT CTCCACCATC AACCACCTCA GCTTCCCACC CTGTTTCCTC CTGGCGTCTG
  CCTTTCTTCT GTGTCTTTCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	MA/MyJ	QSi5/Ianm
ss383315335	MGP_WTSI_11_49608937	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	MA/MyJ	QSi5/Ianm
rs251298601					SNP	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383315335	MGP_WTSI_11_49608937	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:49686262 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2800	CpG island 2800	416 bp distal
Gfpt2	glutamine fructose-6-phosphate transaminase 2	within coordinates
Gm36507	predicted gene, 36507	within coordinates
Rr446281	regulatory region 446281	1238 bp distal
Rr446282	regulatory region 446282	within coordinates
Tssr101196	transcription start site region 101196	1251 bp downstream