rs251300717 SNP Detail

Summary

• ID
  rs251300717
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:32000024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTCTGTG TGTGTCTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGCTGG GAACAGTATG TATGCCAAAG
  CATAAGTGTG GAGGTCAGAA GACTCTGCAA AGTCTGTTCT CTCCTCCCAA TTTACTTGGG
  TTCCAGGGAT CAAGCGGAGG TCATCAGGAT TGTGCAGTAA ATGTTTTTAC CTGGTGAGCC
  M
  TGGTGAGCCC TGGCCTCATA ATTAAATGTT TATAAAAATA ACAAAAATAG CCGGGTGTGG
  TGGTGCACGC CTTTAATCCC AACACTCAGG AGGCAGAGGC AGGCGGATTT CTGATTTCGA
  GGCCAGCCTG GTCTACAGAG TGAGTTCCAG GACAGCCAGG GCTACACAGA GAAACCCTGT
  CTCGAAAAAC AAAAAAACAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss395853983	MGP_WTSI_16_32181292	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	A	C	C	C	A	A	C	C	C	C	A	C	C	A	A	A	C	A	A	C	C	A	A	C	C	C	C	A	C	A	C	C	A	C	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs251300717					SNP	C	C	C	C	A	C	C	C	A	A	C	C	C	C	A	C	C	A	A	A	C	A	A	C	C	A	A	C	C	C	C	A	C	A	C	C	A	C	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395853983	MGP_WTSI_16_32181292	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32000024 () rs orientation: forward

Symbol	Name	Function Class
Bex6	brain expressed family member 6	Intron
Rr514654	regulatory region 514654	1503 bp proximal
Rr514655	regulatory region 514655	1661 bp proximal
Tssr137951	transcription start site region 137951	1418 bp downstream
Tssr137952	transcription start site region 137952	1371 bp downstream
Tssr137953	transcription start site region 137953	1356 bp downstream
Tssr137954	transcription start site region 137954	1349 bp downstream
Tssr140795	transcription start site region 140795	1620 bp upstream
Tssr140796	transcription start site region 140796	1598 bp upstream
Tssr140797	transcription start site region 140797	1569 bp upstream
Tssr140798	transcription start site region 140798	1518 bp upstream