rs251312551 SNP Detail

Summary

• ID
  rs251312551
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115508786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCAGCGGCA GGGGGCCCCT CAGGGTCTGG
  GCTGCTAAGA AGCAGCCTCC CAGAAAGATC TGGGGCAGAG TGACTAAAAT AAAACCAAAT
  GAATAGGAGC CCCTCCGCCC CAACCAGCAG AGAGAAGGGA AGAGAAGGGG CGGAGCCTGG
  M
  AGCTCCTAAA TTCTAATTCA CACAGCTTCC CGCAGTCCCC AGCGCGGGAC GGACTCTGAA
  ACTAGGCATG GGGATCCCTG GGAAAACTTT TCTTCGTTAA AAATCTTAGA GGACAGAGGA
  CAAGCCTGCA CTTGGTAGAG GAGCTTTCTG                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320892953	CHEV_3_115418055	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251312551					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115508786 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13725	CpG island 13725	within coordinates
Gm9889	predicted gene 9889	within coordinates
Rr397956	regulatory region 397956	795 bp upstream
Rr583585	regulatory region 583585	104 bp distal
Rr583586	regulatory region 583586	within coordinates
Rr583587	regulatory region 583587	1426 bp proximal
S1pr1	sphingosine-1-phosphate receptor 1	82 bp upstream
Tssr31332	transcription start site region 31332	19 bp upstream
Tssr35276	transcription start site region 35276	1390 bp upstream
Tssr35277	transcription start site region 35277	1331 bp upstream
Tssr35278	transcription start site region 35278	340 bp upstream
Tssr35279	transcription start site region 35279	324 bp upstream
Tssr35280	transcription start site region 35280	274 bp upstream
Tssr35281	transcription start site region 35281	218 bp upstream
Tssr35282	transcription start site region 35282	190 bp upstream
Tssr35283	transcription start site region 35283	75 bp upstream