rs251314224 SNP Detail

Summary

• ID
  rs251314224
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:162501704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAACTTCG CTGGCACGAA
  AACAAGCTGT TCCTTCCCAT ACATCCTGTG TCCAGTTTCC ATTTTAACAT CAAGTCAGGG
  AAGAAAACCT AAGACATTTC TAACGGAATG TCACTCCGGC GGTTCTTCCT CTCAAAAGCA
  GCCTGTTTAG AGACTTCCAT CAGGCTCACT GCCTTTCTTT CCCTTTCTTC CTCCCCTGAT
  K
  TCTTATGTGA GCACAGCTGT TGCTTAGCAA TCCAAAAAGA ACCCTTTCCT AAGTTCCGCT
  GACATGCCTC AACGTGCCCC CCGCCCCCGA CCCCGACCAG CGACAGCAGC TCAGTGTGGT
  CACTCCTAAA CCAAAGGTGC TAAGAAACTT CGAGGTGATT TTGAACTTGG AGGTATCCCT
  CCCCACCTCT CCTTCCCTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356387044	MGP_WTSI_2_162485520	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251314224					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356387044	MGP_WTSI_2_162485520	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:162501704 () rs orientation: forward

Symbol	Name	Function Class
9430021M05Rik	RIKEN cDNA 9430021M05 gene	1379 bp upstream
Cpgi12617	CpG island 12617	375 bp proximal
Ptprt	protein tyrosine phosphatase receptor type T	within coordinates
Rr569217	regulatory region 569217	1705 bp distal
Rr569218	regulatory region 569218	within coordinates
Rr569219	regulatory region 569219	578 bp distal
Rr569220	regulatory region 569220	241 bp distal
Rr569221	regulatory region 569221	1300 bp proximal
Rr569222	regulatory region 569222	1499 bp proximal
Tssr21417	transcription start site region 21417	1408 bp upstream
Tssr21418	transcription start site region 21418	1460 bp upstream
Tssr21419	transcription start site region 21419	1520 bp upstream
Tssr27272	transcription start site region 27272	1265 bp downstream
Tssr27273	transcription start site region 27273	1291 bp downstream