rs251316792 SNP Detail

Summary

• ID
  rs251316792
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:119899246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATGCCTT TCCTCCCTGC
  CTCACCTGCT GTGGGCTGAC AAGCCAGCCT GTCCTGCTCA TGGATGCCGC AGCAGGTGAG
  CTCTGTGACG AGTGTCAGTA ACTCACGCTG GTATCCTTGT TCCCAGATGG ACGGCTGCAC
  ACACCGAGGG CACTGAGCTC GCCTGAGCTT GCAGGACATC CCATTTCAGG GTGAGGAGGC
  R
  GCAAGCCTGC TCTATGGACC TGAAGGCCAC AGACTGTACC TCATCCATCT GTGCATGTGT
  GTGCAAGTGT GTGTGGGTAT GTATGTGTGG GTATGTATGT GTGCAAGTGT GTGTGGGCAT
  GTATGTGTGC ACAAGTGTGT GTGCATGTAT GTGTGGGCAT GTATGTATGC ACATGTGTGT
  GTGCAAGTGT GTGTGGGCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323224504	CHEV_9_119979298	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251316792					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:119899246 () rs orientation: forward

Symbol	Name	Function Class
Cx3cr1	C-X3-C motif chemokine receptor 1	1884 bp upstream
Gm33858	predicted gene, 33858	within coordinates
Rr688628	regulatory region 688628	481 bp proximal
Tssr92011	transcription start site region 92011	1889 bp upstream
Tssr92012	transcription start site region 92012	1879 bp upstream