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rs251330661 SNP Detail
Summary
  • ID
    rs251330661
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:122825551 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTTTCTTCCT GTCTACAAAG
ATCAGCAGCA TAAGAGGTGT TTTAGGCACA CCATGGTAAA TATCAGAAGG AACAGCTACA
ATTCTTGCAA AGTAGGGAGA GATGGGAACT ACTGGGCACT GGAGAAACCA CCCTTTTTTA
TTTCATTTTT AATTAGTTCC TTTAAAATTG GCTGCATACA GTACTTTATA TTAGCATGGT
Y
CAGGCAAACA TTAATTTGAA AAAAAAAAAA AGAAAAGAAA AGAAAAGAAA AAAAAGAGAG
TGTGCCTGAC ACTTTTGTCA TGTAAGATAC CTAGACTCAT GTTTAAAATC TTTTGATATT
GCTGTTGAAG CATGCATTGA TCCTGAAGTT CCACCCATCA TCCCATTAGG ATATTGTTTT
ATTCTATGTG AGATACAAAG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss369914759 MGP_WTSI_6_122798610 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs251330661 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss369914759 MGP_WTSI_6_122798610 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:122825551 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
C3ar1 complement component 3a receptor 1 within coordinates
Tssr58709 transcription start site region 58709 616 bp downstream
Tssr58710 transcription start site region 58710 396 bp downstream
Tssr58711 transcription start site region 58711 1865 bp upstream
Tssr58712 transcription start site region 58712 1983 bp upstream
Tssr62966 transcription start site region 62966 806 bp upstream
Tssr62967 transcription start site region 62967 761 bp upstream
Tssr62968 transcription start site region 62968 713 bp upstream
Tssr62969 transcription start site region 62969 393 bp upstream
Tssr62970 transcription start site region 62970 373 bp upstream
Tssr62971 transcription start site region 62971 313 bp upstream
Tssr62972 transcription start site region 62972 213 bp upstream
Tssr62973 transcription start site region 62973 152 bp upstream
Tssr62974 transcription start site region 62974 66 bp upstream
Tssr62975 transcription start site region 62975 15 bp downstream
Tssr62976 transcription start site region 62976 61 bp downstream
Tssr62977 transcription start site region 62977 124 bp downstream
Tssr62978 transcription start site region 62978 201 bp downstream
Tssr62979 transcription start site region 62979 232 bp downstream
Tssr62980 transcription start site region 62980 257 bp downstream
Tssr62981 transcription start site region 62981 276 bp downstream
Tssr62982 transcription start site region 62982 437 bp downstream
Tssr62983 transcription start site region 62983 894 bp downstream
Tssr62984 transcription start site region 62984 964 bp downstream
Tssr62985 transcription start site region 62985 1007 bp downstream
Tssr62986 transcription start site region 62986 1318 bp downstream
Tssr62987 transcription start site region 62987 1448 bp downstream
Tssr62988 transcription start site region 62988 1516 bp downstream
Tssr62989 transcription start site region 62989 1675 bp downstream
Tssr62990 transcription start site region 62990 1721 bp downstream
Tssr62991 transcription start site region 62991 1748 bp downstream
Tssr62992 transcription start site region 62992 1773 bp downstream
Tssr62993 transcription start site region 62993 1867 bp downstream
Tssr62994 transcription start site region 62994 1973 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory