rs251333379 SNP Detail

Summary

• ID
  rs251333379
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:46855783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCACATG GCAGCTCCAG
  ACCATCTGTA ACTCCAATCC CAAGAGTCCA ACACCCTCTT CTGACCTCCA AGGGCACCCT
  GCACATACAT ACAGGCAAAA CACTCATGCA CACAAAATAA ATCCTTTTTA ATTTATTTAA
  AAATAAAATA TATGGCCGGG CAGTGGTGGC GCATGCCTTT AATCCCAGCA CTTGGGAGGC
  W
  GGGGCAGGTG GATTTCTGAG TTGGAGGCCA GCCTGGTCTA CAGAGTGAGT TCCAGGACAG
  CCAGGGCTAC ACAGAGCAAC CCTGTCTCGA AAAAAGCAAA TAAAATAAAT AAATCTGTGT
  GTATGAATTT TGTTTGTGTA TTTGTCTGTG CAGCACTTGC CTGGTGCCCT TGGAGGCCAG
  GGAAGGCATC AGATCCCCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325404788	CHEV_17_46681806	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251333379					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46855783 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9232	CpG island 9232	1100 bp proximal
Cul9	cullin 9	Intron
Rr527757	regulatory region 527757	858 bp proximal
Rr527758	regulatory region 527758	1521 bp proximal
Tssr148330	transcription start site region 148330	1418 bp downstream