rs251333648 SNP Detail

Summary

• ID
  rs251333648
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83464141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAAACCTG AGCAGCCAGG
  TTTCAGGCTA GGGGGAGAGG TTACAAATGA GGACTAAGAA AAATCTGTTT TCTGAAATCA
  TAAAGAGCTT CATTCCAGAC TTGCAGGGAT GTTCAACATA CATAAATCAG TAAATGAGAT
  CCACTGTATA AATGGACTCA ATTCAAGAAA GCAGAAAGTA GATTCAGAAA ATGCCTGTGG
  Y
  GAAAACCAAC AGCTCTTCAT TATTAAAGCC CTGAAGACAA CAGAAATACA AGGAACGTAT
  TTCAATACAA TAAAGGAAAT ATACAACAAG CCTGTAGCCA ACGGAATGCT AACCGGAGAA
  AAACTGGAAG CATTTCTGCT AAAAATCAGG AAAGGGACAT GGATACTTTC TCTCAGTACT
  TCTTTTCAGC TGAGTACTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384072482	MGP_WTSI_11_83386817	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251333648					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384072482	MGP_WTSI_11_83386817	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83464141 () rs orientation: forward

Symbol	Name	Function Class
Ccl9	C-C motif chemokine ligand 9	within coordinates
Rr452988	regulatory region 452988	1889 bp distal
Rr452989	regulatory region 452989	664 bp distal
Tssr103714	transcription start site region 103714	1332 bp upstream
Tssr103715	transcription start site region 103715	1373 bp upstream
Tssr109677	transcription start site region 109677	358 bp downstream
Tssr109678	transcription start site region 109678	734 bp downstream
Tssr109679	transcription start site region 109679	1012 bp downstream
Tssr109680	transcription start site region 109680	1274 bp downstream
Tssr109681	transcription start site region 109681	1396 bp downstream
Tssr109682	transcription start site region 109682	1665 bp downstream
Tssr109683	transcription start site region 109683	1716 bp downstream
Tssr109684	transcription start site region 109684	1742 bp downstream
Tssr109685	transcription start site region 109685	1787 bp downstream
Tssr109686	transcription start site region 109686	1850 bp downstream
Tssr109687	transcription start site region 109687	1899 bp downstream
Tssr109688	transcription start site region 109688	1946 bp downstream
Tssr109689	transcription start site region 109689	1989 bp downstream