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rs251335835 SNP Detail
Summary
  • ID
    rs251335835
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr15:97966274 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATGTTAAATG TCTTTGTTTT
    CTGTAAATTA CTCTTTTCCT GTACCCTTGC TTCTTTCTTC CTTTTTTCTT TCCTAGACTC
    CTTTGTTTTA ACTCTTCAGT TTTTCTCATG TTTACCTTTA CTAACTTTTA AGTTCCCAGT
    GTATTCTACA CTGCTGCTGC CTCCCTCCCT CCCTCCCTCC CTCCCTCCCT CCCTATGTCC
    R
    TGGCCTAGTG ACTGTCCTTC ACTGTTTCTT GTCTTTGTTT TGCTTCTGTG TCGCTGCTGT
    CTTGGCAGCT TGATTTTTCC CTTCTGGGTG ATATGAGGAT GAGCCTCCAA GAAAAGGCTG
    CTCCTCCCAA ATAAAACCAT AAAGAGATCC GTTCTAGGCT GAGAGCAGAC AGAGCCGAGG
    ATGGGCTCTG GCTCCCCAGG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss395127745 MGP_WTSI_15_97898824 EVA_MGPV3 EVA_MGPV3 f SNP G G G A G G G G G G G G G G G G G G G A G A G G G G A G G G G G A G A G G G G G G G G G G G A G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs251335835 SNP G G G A G G G G G G G G G G G G G G G A G A G G G G A G G G G G A G A G G G G G G G G G G G A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss395127745 MGP_WTSI_15_97898824 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr15:97966274 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm25668 predicted gene, 25668 1361 bp upstream
Rr305744 regulatory region 305744 1327 bp proximal
Rr315538 regulatory region 315538 127 bp proximal
Rr315539 regulatory region 315539 1927 bp proximal
Rr316424 regulatory region 316424 1225 bp distal
Rr370004 regulatory region 370004 676 bp downstream
Senp1 SUMO1/sentrin specific peptidase 1 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory