rs251360619 SNP Detail

Summary

• ID
  rs251360619
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:71574576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCATCAGGT ATTTTATTGG
  TAGAATGGAT TCTGTTTCCA GGTTGACTCA TTTAAGCCCT GATAAACCAG AGCCCTGGCC
  TCCTCAGCAA CTTGAAGATT ATCAAAATCA CCTTATCTGA ATGGGGGAGG GGGGACCGGG
  TGGGGGGAGT AAGTATTCAG CTGTAGTGAC TCAGCCAACT CCTCCCATTC CCCCCCCCCC
  M
  AAAAAAAAAC TATATAGGAG ACCGTTCTCC ATGAGGAAAT GAAGGTATAA AACGTTTTCC
  AAGATCCAGA GGAAGAGAGA CAAGCTCATG AATGACAAAT GCCATGGAGG GCCAGAGTGA
  CTGTTTGTTC AAAAAGCTTT TGAATACGAG GCTCCAGTGG CCCATCCCAT GGGTGGCTGT
  GCCCTTCAGC AGACACAGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CBA/J	CE/J	DBA/2J	KK/HlJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss354422915	MGP_WTSI_2_71582289	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CBA/J	CE/J	DBA/2J	KK/HlJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs251360619					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354422915	MGP_WTSI_2_71582289	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:71574576 () rs orientation: forward

Symbol	Name	Function Class
Gm13647	predicted gene 13647	within coordinates
Gm17250	predicted gene, 17250	within coordinates
Gm74659	predicted gene, 74659	1613 bp upstream
Rr62438	regulatory region 62438	within coordinates
Rr373341	regulatory region 373341	253 bp upstream
Tssr18283	transcription start site region 18283	1592 bp upstream
Tssr24495	transcription start site region 24495	1508 bp downstream