rs251363075 SNP Detail

Summary

• ID
  rs251363075
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54801109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCTCCTGA GCCCCCAAGC
  CCATCCCACA GTGCTCCTGA GACCAGCCAA GACAACTGTG AGCGCGATGG CCGTGTACCC
  CAGGTCAGGG GTGGTGTCTC TATGAAGGAG GGGCCCGAAG CCCTTGTGGG CGGGCCTCCC
  CTGAGCCCGT CTGTGGTGCC AGCCCTTAGT GCATTCAGGC TTAGGCTCCC AGGCAGGGAC
  R
  CTACCCCCGC GCCTCTGGAG GACATGCTAT CCTCTCACTC TGTCCACTGG TATCTCAACA
  CCCCCATCTG CCCAGTAAAG GTCTTTCTGC AGCAGTTCAG CCTACTTGGA ATTTTCTCAA
  TGGTAGCTCC CTTGCGAGGT GGGGGACTGT GGCTGGAGAC AAGGGAGGGT GAAGGAAGGG
  AGGGAGGTAC ACAGGGTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323674149	CHEV_11_54723785	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251363075					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54801109 () rs orientation: forward

Symbol	Name	Function Class
Gpx3	glutathione peroxidase 3	within coordinates
Tnip1	TNFAIP3 interacting protein 1	502 bp downstream
Tssr3502	transcription start site region 3502	639 bp upstream
Tssr3503	transcription start site region 3503	167 bp downstream
Tssr101561	transcription start site region 101561	1726 bp downstream
Tssr101562	transcription start site region 101562	1679 bp downstream
Tssr101563	transcription start site region 101563	1667 bp downstream
Tssr101564	transcription start site region 101564	1646 bp downstream
Tssr101565	transcription start site region 101565	1216 bp downstream
Tssr101566	transcription start site region 101566	1170 bp downstream
Tssr101567	transcription start site region 101567	807 bp downstream
Tssr101568	transcription start site region 101568	733 bp downstream
Tssr101569	transcription start site region 101569	650 bp downstream
Tssr101570	transcription start site region 101570	599 bp downstream
Tssr101571	transcription start site region 101571	523 bp downstream
Tssr101572	transcription start site region 101572	479 bp downstream
Tssr101573	transcription start site region 101573	452 bp downstream
Tssr101574	transcription start site region 101574	427 bp downstream
Tssr101575	transcription start site region 101575	380 bp downstream
Tssr101576	transcription start site region 101576	359 bp downstream
Tssr101577	transcription start site region 101577	337 bp downstream
Tssr101578	transcription start site region 101578	252 bp downstream
Tssr108007	transcription start site region 108007	1709 bp upstream
Tssr108008	transcription start site region 108008	1648 bp upstream
Tssr108009	transcription start site region 108009	1632 bp upstream
Tssr108010	transcription start site region 108010	1212 bp upstream
Tssr108011	transcription start site region 108011	596 bp upstream
Tssr108012	transcription start site region 108012	515 bp upstream
Tssr108013	transcription start site region 108013	495 bp upstream
Tssr108014	transcription start site region 108014	480 bp upstream
Tssr108015	transcription start site region 108015	399 bp upstream
Tssr108016	transcription start site region 108016	337 bp upstream
Tssr108017	transcription start site region 108017	296 bp upstream
Tssr108018	transcription start site region 108018	275 bp upstream
Tssr108019	transcription start site region 108019	206 bp upstream
Tssr108020	transcription start site region 108020	187 bp upstream
Tssr108021	transcription start site region 108021	170 bp upstream
Tssr108022	transcription start site region 108022	127 bp upstream
Tssr108023	transcription start site region 108023	86 bp downstream