rs251369648 SNP Detail

Summary

• ID
  rs251369648
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:121262259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGGTACC TCATTTGAAA
  CCCCGGTTGG GGGTACGGTT TCAGCGGAGC TGCCTTGTAT TGGGGTGGGG TGGGGGAGAG
  CAGCCAGCTT CTTAAAAAAA AAAAAAAAAG CAAAACAGGT GGTAGCTCAT AGTGGTCACC
  CACAAATTTA TAGGATGGCC TGCCTAGTTC TCACCAAACA GGTGACTGAA CTTGGCCTTC
  W
  AGATACCCTA GGGAGAAAGG TGCGACAAGA TTTGGAGGAA GAGCCTGGTG TTGTTACCTG
  GGGAACCTGG CCCGCAGGCA GCGCGGCCAG GTGCGAGCTG CTCATTTACA TGTTGTCCCC
  TCCCCACCCC CCCAAGCCAG TAATCCAGGT GGGAAAGGGG TTGGACCAGC CCGGGAGGTT
  TTTCATTTTG TTTTTACGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376272875	MGP_WTSI_8_123059420	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251369648					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376272875	MGP_WTSI_8_123059420	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:121262259 () rs orientation: forward

Symbol	Name	Function Class
1700016A09Rik	RIKEN cDNA 1700016A09 gene	1372 bp downstream
Cpgi21150	CpG island 21150	within coordinates
Gse1	genetic suppressor element 1, coiled-coil protein	within coordinates
Rr401179	regulatory region 401179	1690 bp upstream
Tssr79769	transcription start site region 79769	203 bp upstream
Tssr79770	transcription start site region 79770	269 bp upstream
Tssr79771	transcription start site region 79771	1039 bp upstream
Tssr79772	transcription start site region 79772	1843 bp upstream
Tssr79773	transcription start site region 79773	1903 bp upstream
Tssr79774	transcription start site region 79774	1927 bp upstream
Tssr79775	transcription start site region 79775	1952 bp upstream
Tssr79776	transcription start site region 79776	1985 bp upstream
Tssr83196	transcription start site region 83196	1744 bp downstream