rs251375916 SNP Detail

Summary

• ID
  rs251375916
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:78797479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTTGACA AATAATGGTG
  GACTCCTTAG TGATTTTATA CACACACACA CACACACACA CATACACATA TATAAATATA
  ATGTTAAAAT AGATGAGAGA CTTAATATAA TTCTACCTAA GGGTCATCCA AAGTGGTACA
  GTGACTTAGC TATGCATGTC GACTTCGGAA TTGTAATTTT TTTGAAAAAA GATTTTATTT
  M
  TATGTTCATG GGGGTGGGAT ATTGACACAT ATATGCATGT GCCAGTGGCA GCTGAAGGCA
  TTGAATTCCC CTAGAACTAG AGTTACAGGC TCTCGGGGAC CACCCATTGT GGGTGCTGGG
  AGCTTAACTT GGTTCCTCAG CAAGAGCTCT TTAATGCTGA GCCCTCCATC TAGGCTACTG
  TATTGTGGTC TGATTAAAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386596303	MGP_WTSI_12_79851692	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251375916					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386596303	MGP_WTSI_12_79851692	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:78797479 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4794	CpG island 4794	988 bp distal
Gm54984	predicted gene, 54984	1982 bp downstream
Gm60106	predicted gene, 60106	1125 bp upstream
Pals1	protein associated with LIN7 1, MAGUK family member	within coordinates
Rr403364	regulatory region 403364	1849 bp downstream
Rr468462	regulatory region 468462	1703 bp distal
Rr468463	regulatory region 468463	1136 bp distal
Rr468464	regulatory region 468464	788 bp distal
Tssr114060	transcription start site region 114060	1785 bp downstream
Tssr114061	transcription start site region 114061	1734 bp downstream
Tssr114062	transcription start site region 114062	1686 bp downstream
Tssr114063	transcription start site region 114063	1664 bp downstream
Tssr116791	transcription start site region 116791	1105 bp upstream