rs251387017 SNP Detail

Summary

• ID
  rs251387017
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:184542431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCGGTCAGC ATGTCCACTG
  GACCGGCCTG ATCTGAGGCG AATGGCTTGT GTTAGCTTTA GAGAGCTGAG ACGGGGAGGT
  CGCAGCCTCT GTTAGCCTGT GTCCTCTGCT GAAGGAGAGG CCTGAGGATC CTGATACGCA
  GCCTTCCAGT GATGCCCAGA GCTGGTGGGA GACCAGACCT GAAGAGAGCA GAGCTGCTGA
  M
  CCTTCGCTGA AGTCCCGGCG ACAGGGGTCA CTCCTCAGCT GGACTCTTAG TCGCTGTTTA
  CAAATCCCAG GTTGCCCCCC CCCCCACCCA GTGCAGAACC TTTATCTGAC AAGAGCCTTG
  GGGAAATAAC ACTCACAGCT TATTTTCTTA AGCTGTCATG CATGCTCAAC TACTGCACTA
  ACAGGGATGA GCCGTGCCTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320169569	CHEV_1_186634113	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251387017					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184542431 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1161	CpG island 1161	427 bp proximal
Gm70890	predicted gene, 70890	1690 bp upstream
Mtarc1	mitochondrial amidoxime reducing component 1	Intron
Rr425290	regulatory region 425290	953 bp proximal
Rr425291	regulatory region 425291	1701 bp proximal
Tssr15650	transcription start site region 15650	746 bp downstream
Tssr15651	transcription start site region 15651	922 bp downstream
Tssr15652	transcription start site region 15652	936 bp downstream
Tssr15653	transcription start site region 15653	1025 bp downstream
Tssr15654	transcription start site region 15654	1052 bp downstream
Tssr15655	transcription start site region 15655	1070 bp downstream