rs251391129 SNP Detail

Summary

• ID
  rs251391129
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52150512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTC TCTCTCTCTC TCTCTCTCTC
  R
  CTGTGTGTGT GTGTGGGGGG GGGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321799641	CHEV_6_52123531	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251391129					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52150512 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17417	CpG island 17417	604 bp distal
Cpgi17418	CpG island 17418	1661 bp proximal
Gm15050	predicted gene 15050	within coordinates
Gm28308	predicted gene 28308	within coordinates
Gm57749	predicted gene, 57749	1647 bp upstream
Hoxa3	homeobox A3	within coordinates
Rr630350	regulatory region 630350	641 bp distal
Rr630351	regulatory region 630351	within coordinates
Rr630352	regulatory region 630352	1357 bp proximal
Rr630353	regulatory region 630353	1714 bp proximal
Tssr56504	transcription start site region 56504	707 bp downstream
Tssr56505	transcription start site region 56505	645 bp downstream
Tssr56506	transcription start site region 56506	581 bp downstream
Tssr56507	transcription start site region 56507	1642 bp upstream