rs251397850 SNP Detail

Summary

• ID
  rs251397850
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:44883826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCACCCCGG CGGCCGAGCG
  GCCGCCCGCT TGCTCGGCAC ACGGGCGCTT GTCCTGAGGT GACACCGCCG GCAACGGCTG
  AAGCAAGCGG GCGCTGCCGA TCAGCGAGTT CGCACCGAGC GAGGATCCCT CTTGGTGCGT
  GGCCCAGTTT GGCTGAGGAC CCGCTCCAAC CCCTCGCTGA CACCGCCCCC CGCCGCCGCC
  R
  CCGCCACGCT CCGAGGCCTT TCCCCCGGGA AGCCTGGCGG CTTGCCCTCG CGGGCCCGCG
  GGCGCGCTCT CGCGCGCCGA TTCCTCGATT CCACAGGCGG TTCGCGCCCG GGGTGGGGGC
  GGGGCGGGGC GCGCGGGGCC GGGCCGAGCC GGGCCGGGCC GGGAGGGCGG CCCCCGCGGG
  GAGGGGACTG GGGGGCGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss388465230	MGP_WTSI_13_44825719	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs251397850					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388465230	MGP_WTSI_13_44825719	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:44883826 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi5525	CpG island 5525			within coordinates
Gm60383	predicted gene, 60383			249 bp upstream
Jarid2	jumonji and AT-rich interaction domain containing 2			Intron
				Noncoding-Transcript-Variant
Rr369688	regulatory region 369688			257 bp upstream
Rr403743	regulatory region 403743			738 bp upstream
Rr478586	regulatory region 478586			260 bp distal
Rr478587	regulatory region 478587			within coordinates
Rr478588	regulatory region 478588			849 bp proximal
Tssr119535	transcription start site region 119535			800 bp downstream
Tssr119536	transcription start site region 119536			736 bp downstream
Tssr119537	transcription start site region 119537			653 bp downstream
Tssr119538	transcription start site region 119538			543 bp downstream
Tssr119539	transcription start site region 119539			244 bp upstream
Tssr119540	transcription start site region 119540			376 bp upstream
Tssr119541	transcription start site region 119541			531 bp upstream
Tssr119542	transcription start site region 119542			669 bp upstream
Tssr119543	transcription start site region 119543			915 bp upstream
Tssr119544	transcription start site region 119544			931 bp upstream
Tssr119545	transcription start site region 119545			975 bp upstream
Tssr119546	transcription start site region 119546			1003 bp upstream
Tssr119547	transcription start site region 119547			1218 bp upstream
Tssr119548	transcription start site region 119548			1374 bp upstream
Tssr119549	transcription start site region 119549			1492 bp upstream