rs251399542 SNP Detail

Summary

• ID
  rs251399542
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:18070266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCGCCCG GCGGCAACTG
  CCACCGCCGC CCCTCCCCCG GCCCGCCCGC CGCCGCCGCC GCTCCGCCCC CGCCGCCGCC
  TCGCCCCGCC CCCCGCCCCG CCCGGCGCGC AGCCCGCGGG AGCCCGGCGT GGTCGCCGCG
  GGCTCGGGCT GTGCCCCGGC CTGTGGGAGA AAGTGCGTGT GGCCCGGGCT ATCACGTGAC
  Y
  CCGCGCTCAC TCAAGTGTCA TTAGGTGGCC GCCGGCGTCG GGCCGCGTCC TGCGCAGGGT
  AGGGTGGGAG CGCGAGACCC GCGCTGGAGT CACGGTGACG GCGCGTGGTG GCTTTGGGAA
  CCGGAGGCCT CCTCCCCCTC CCCTGCCTGC TCCCGGTCTG CCGCAGCGTT GTCAGGAGAC
  TTCCTGTGGC CTGGGACAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss353244166	MGP_WTSI_2_17987082	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs251399542					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353244166	MGP_WTSI_2_17987082	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:18070266 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1810059C17Rik	RIKEN cDNA 1810059C17 gene			983 bp upstream
Cpgi11235	CpG island 11235			within coordinates
Mllt10	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10			Intron
				Noncoding-Transcript-Variant
Rr552295	regulatory region 552295			758 bp distal
Rr552296	regulatory region 552296			979 bp distal
Rr552297	regulatory region 552297			849 bp distal
Rr552298	regulatory region 552298			within coordinates
Tssr16361	transcription start site region 16361			1542 bp downstream
Tssr16362	transcription start site region 16362			1125 bp downstream
Tssr16363	transcription start site region 16363			1107 bp downstream
Tssr16364	transcription start site region 16364			1047 bp downstream
Tssr16365	transcription start site region 16365			1026 bp downstream
Tssr16366	transcription start site region 16366			811 bp downstream
Tssr16367	transcription start site region 16367			750 bp downstream
Tssr16368	transcription start site region 16368			733 bp downstream
Tssr16369	transcription start site region 16369			639 bp downstream