rs251400775 SNP Detail

Summary

• ID
  rs251400775
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:82604523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACAGGGA ACCAGTGCAG
  GTTCCTGGGG TCCACTGACT GACGGGAAAC CTTACCTCCA GGGCTCAGGG GCTCACGTCT
  ATAATTCTAG CACTCACAAG GTGGGGGCGG GAGATTGCAT GAATTTGAGG CCAGCCAAAG
  TTATGTAATG AGTTCTAAGC AAGAGACGCT GTCTCAAAAA TGCATGCCTT TAATCCTAGC
  R
  CTGGGGAAGC AGAGGTTGAG CTCTGTGAGC TTGAAACCAG CCTGATCTAC AAAGTGAGTT
  CCAGTACAGC CAGGACACAG AAAAACCCTG TCTCCACACA CACACACACA CACACACACA
  CACACACATC CACTACCACC ACCACCACAA CAACAACAAA ACAGACAACA AAAACCCACC
  AGGGGCTAGA GAGTTGGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401436779	MGP_WTSI_18_82755790	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	A	A	G	G	G	A	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251400775					SNP	A	A	A	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	A	A	G	G	G	A	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401436779	MGP_WTSI_18_82755790	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:82604523 () rs orientation: forward

Symbol	Name	Function Class
D18Nds1	DNA segment, Chr 18, Nuffield Department of Surgery 1	62 bp proximal
Gm58829	predicted gene, 58829	760 bp upstream
Mbp	myelin basic protein	761 bp downstream
Tssr152157	transcription start site region 152157	1943 bp downstream
Tssr152158	transcription start site region 152158	1906 bp downstream
Tssr152159	transcription start site region 152159	1882 bp downstream
Tssr152160	transcription start site region 152160	1836 bp downstream
Tssr152161	transcription start site region 152161	1820 bp downstream
Tssr152162	transcription start site region 152162	1799 bp downstream
Tssr152163	transcription start site region 152163	1782 bp downstream
Tssr152164	transcription start site region 152164	1737 bp downstream
Tssr152165	transcription start site region 152165	1664 bp downstream
Tssr152166	transcription start site region 152166	1628 bp downstream
Tssr152167	transcription start site region 152167	1596 bp downstream
Tssr152168	transcription start site region 152168	1567 bp downstream
Tssr152169	transcription start site region 152169	1514 bp downstream
Tssr152170	transcription start site region 152170	1406 bp downstream
Tssr152171	transcription start site region 152171	1362 bp downstream
Tssr152172	transcription start site region 152172	1259 bp downstream
Tssr152173	transcription start site region 152173	1244 bp downstream
Tssr152174	transcription start site region 152174	1210 bp downstream
Tssr152175	transcription start site region 152175	1175 bp downstream
Tssr152176	transcription start site region 152176	986 bp downstream
Tssr152177	transcription start site region 152177	806 bp downstream
Tssr154085	transcription start site region 154085	1857 bp upstream
Tssr154086	transcription start site region 154086	1311 bp upstream
Tssr154087	transcription start site region 154087	1090 bp upstream
Tssr154088	transcription start site region 154088	1061 bp upstream
Tssr154089	transcription start site region 154089	943 bp upstream
Tssr154090	transcription start site region 154090	883 bp upstream