rs251402797 SNP Detail

Summary

• ID
  rs251402797
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:25788486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCACTAT TTGCTCATCC
  AGTCACCCAC CACTGCTACC ACCGCCGCCG CTACCACCAC CACCACCAAT CTCTCTCAAG
  AAAGACAACA GGACCCAGTG AAAACTATAC TTCGACAAAG GCAAGGAAGG CTTTCTGGAA
  ACCAGCCATC CCAAGTTGCC AGGAGTGATG GAGAAACTCC GGGAGATTGT CCTCAGAGCA
  Y
  ACACACACAC ACCCTGAGAA TCTCTCGACC TTGAACCTCA ACTTGCCGGC CAAGCTGAGA
  GGGCAAGACA ACCTGGCTGT CCTGCTCAGC CCAGTATCAC TACTACACAC TGTTTCAAAC
  TCGAATAGAG GCAGCTTGGG AGGTGGGACT GTGCAGCTGT CTTCAATAAT GCCTGCCTTT
  CTCAGGCCAA AGTGCTCATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397880116	MGP_WTSI_17_25706457	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251402797					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397880116	MGP_WTSI_17_25706457	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25788486 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cerox1	cytoplasmic endogenous regulator of oxidative phosphorylation 1			1299 bp upstream
Cpgi8770	CpG island 8770			1482 bp distal
Cpgi8771	CpG island 8771			281 bp proximal
Rr523606	regulatory region 523606			1521 bp distal
Rr523607	regulatory region 523607			1167 bp proximal
Rr523608	regulatory region 523608			1528 bp proximal
Rr523609	regulatory region 523609			1642 bp proximal
Sox8	SRY (sex determining region Y)-box 8			Intron
				Noncoding-Transcript-Variant
Tg(CD3E)26Cpt	transgene insertion 26, Cox Terhorst			within coordinates
Tssr143165	transcription start site region 143165			1310 bp upstream
Tssr143166	transcription start site region 143166			1362 bp upstream
Tssr146845	transcription start site region 146845			1166 bp downstream