rs251410504 SNP Detail

Summary

• ID
  rs251410504
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70702062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACGGTCCG CAACCTCTTC
  TTTACAACTG GGTGACCTCG CGGCTGTGCC AGCCATTTGG CGTTCACCCT GCCGCTAAGG
  GCCATGTGAA CCCCCGCGGT AGCATCCCTT GCTCCGCGTG GACCACTTTC CTGAGGCACA
  GTGATAGGAA CAGAGCCACT AATCTGAAGA GAACAGAGAT GTGACAGACT ACACTAATGT
  K
  AGAAAAACAA GGAAAGGGTG ACTTATTGGA GATTTCAGAA ATAAAATGCA TTTATTATTA
  TATTCCCTTA TTTTAATTTT CTATTAGGGA ATTAGAAAGG GCATAAACTG CTTTATCCAG
  TGTTATATTA AAAGCTTAAT GTATATAATC TTTTAGAGGT AAAATCTACA GCCAGCAAAA
  GTCATGGTAA ATATTCTTTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321815788	CHEV_6_70675072	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251410504					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70702062 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	1368 bp downstream
Igk	immunoglobulin kappa chain complex	within coordinates
Igkc	immunoglobulin kappa constant	1357 bp upstream
Igkj3	immunoglobulin kappa joining 3	1818 bp downstream
Igkj4	immunoglobulin kappa joining 4	1493 bp downstream
Igkj5	immunoglobulin kappa joining 5	1155 bp downstream
Rr158	regulatory region 158	873 bp proximal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	57 bp upstream
Rr399685	regulatory region 399685	469 bp upstream
Rr399686	regulatory region 399686	1433 bp upstream
Tssr1880	transcription start site region 1880	1772 bp upstream
Tssr56953	transcription start site region 56953	1531 bp downstream
Tssr56954	transcription start site region 56954	1399 bp downstream
Tssr56955	transcription start site region 56955	1178 bp downstream
Tssr56956	transcription start site region 56956	730 bp upstream
Tssr56957	transcription start site region 56957	1352 bp upstream
Tssr56958	transcription start site region 56958	1399 bp upstream
Tssr56959	transcription start site region 56959	1417 bp upstream
Tssr56960	transcription start site region 56960	1440 bp upstream
Tssr56961	transcription start site region 56961	1454 bp upstream
Tssr56962	transcription start site region 56962	1462 bp upstream
Tssr56963	transcription start site region 56963	1511 bp upstream
Tssr56964	transcription start site region 56964	1526 bp upstream
Tssr56965	transcription start site region 56965	1532 bp upstream
Tssr56966	transcription start site region 56966	1543 bp upstream
Tssr56967	transcription start site region 56967	1558 bp upstream
Tssr56968	transcription start site region 56968	1582 bp upstream
Tssr56969	transcription start site region 56969	1618 bp upstream
Tssr56970	transcription start site region 56970	1631 bp upstream
Tssr56971	transcription start site region 56971	1651 bp upstream
Tssr56972	transcription start site region 56972	1677 bp upstream
Tssr56973	transcription start site region 56973	1715 bp upstream
Tssr56974	transcription start site region 56974	1747 bp upstream
Tssr56975	transcription start site region 56975	1780 bp upstream
Tssr61321	transcription start site region 61321	1404 bp downstream
Tssr61322	transcription start site region 61322	1569 bp downstream
Tssr61323	transcription start site region 61323	1584 bp downstream
Tssr61324	transcription start site region 61324	1674 bp downstream
Tssr61325	transcription start site region 61325	1740 bp downstream
Tssr61326	transcription start site region 61326	1775 bp downstream
Tssr61327	transcription start site region 61327	1789 bp downstream
Tssr61328	transcription start site region 61328	1880 bp downstream