rs251411006 SNP Detail

Summary

• ID
  rs251411006
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56595621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTGGGTC TCAACATGAC
  AATAGTCCCA GCAGAAGGGG ACTTAGAAAC AAAAACAAAC TAACAAATGT CCCTGTGTGT
  TCAAGTCTAA CAAATGCCCC TGTGTGTTCA AGACAGAGAC CTCTTGCAAG CCAAGAAGTT
  CAGAGGCAAA TGTCTGAAAC ATCCAAGATT CTCTTTCTCT CTCCTTAAAG AGTATGTTGG
  R
  AGTTAGGAGG TACAAAGCAA GTATTGCTCT CTCAGAGGAT CTGAGTTTGA TTCCCAGCAC
  CCATAGCACG GGATTCACAA CTACCTGTAA CTCAAGGTCA AGGACACGTG ATCTCTACAG
  GCACCACATC CACACGGGCA TACACACAAC TCAAAATAAG ATAAGCCAGG TGTGCGCCTT
  TAATCCCAGC ACTTGGGAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398555288	MGP_WTSI_17_56428044	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251411006					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398555288	MGP_WTSI_17_56428044	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56595621 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9353	CpG island 9353	1725 bp proximal
Plin3	perilipin 3	within coordinates
Rr405377	regulatory region 405377	1733 bp upstream
Rr529026	regulatory region 529026	135 bp distal
Rr529027	regulatory region 529027	92 bp proximal
Rr529028	regulatory region 529028	1331 bp proximal
Rr529029	regulatory region 529029	1880 bp proximal
Tssr145294	transcription start site region 145294	955 bp upstream
Tssr148779	transcription start site region 148779	755 bp upstream
Tssr148780	transcription start site region 148780	712 bp upstream
Tssr148781	transcription start site region 148781	667 bp upstream
Tssr148782	transcription start site region 148782	620 bp upstream
Tssr148783	transcription start site region 148783	1444 bp downstream
Tssr148784	transcription start site region 148784	1855 bp downstream
Tssr148785	transcription start site region 148785	1878 bp downstream