rs251417832 SNP Detail

Summary

• ID
  rs251417832
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:73754217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGCCCTG GCATCCATCC
  TTTGCTCCTG GGAGTTCTTT AGATTTGATT TTCTATGCCT GGTTTATTTC ACTTAATCTT
  CTCCAGATCC ATCTGTGTTG CCACACATGC CAGGGTTTCC TCCCGTCTTA AGGTTGAACG
  ATGGCTCATT GTGTATCCAC CCCACATTTT CTGGGTCCAT CCATCCATAT CTCTGTCCAT
  Y
  CAGCCATACG ATGATAATGT TGCCGTGAAC AGGGCGTGCA GTTCTCTTTT CAATCATCTT
  GCTTCTGACT TCAGACTTCT TGGATATAAA CCGAGCTTGT GGAACTGTTG GTTGGATCAT
  ACGCATATTC CATTTTAACT TTTGAGGCGT CTCCATTTGG ATTTGGGCGG TGGTTGACGG
  ACTCACAGGC CCAGTGTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324098774	CHEV_12_74808430	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251417832					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:73754217 () rs orientation: forward

Symbol	Name	Function Class
Prkch	protein kinase C, eta	within coordinates
Rr257347	regulatory region 257347	1617 bp distal
Rr257348	regulatory region 257348	1184 bp proximal
Rr268127	regulatory region 268127	1568 bp distal
Rr268128	regulatory region 268128	785 bp proximal