About   Help   FAQ
rs251421794 SNP Detail
Summary
  • ID
    rs251421794
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr6:28423902 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GTCCGCGCTC TTTTCGCGGA
    TCTTCGGGAA GAAGCAGATG CGGATCCTTA TGGGTGAGGC AGATCGAGCG CGCGGCCCGC
    TTGGGGCGCC GGCCCCGCCG CAGCCCTCCC GCCCCCGCGT CCCTCTAGCC CCGCTCACCT
    GGTACCCTGA CCCCGAGACA CCCCACCGCC AAAGCCTCTG GGGGCCGCGC TCCCGTGCAA
    R
    CCAGGATCTG CAGTGTCGGC CCTGGGCCTG AAACCCGGAG CTGGGGCCTG GGTGGGGTGA
    CGCTTCCTCC GCCCCAGCCC GGCTGCTAAG AAGGGAGGAT TCCGCCCTTG GAAACGACTT
    TTCAAAGGAA CGCGGCCTTC CTCCCAGGTC CCCTACCTCC CTAGCCCCTC TCGCCCCTCG
    GGCACTTGAG GGGCAGGAGT                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ss367792760 MGP_WTSI_6_28373903 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
rs251421794 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss367792760 MGP_WTSI_6_28373903 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:28423902 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Arf5 ARF GTPase 5 Intron
Cpgi17215 CpG island 17215 1940 bp distal
Cpgi17216 CpG island 17216 within coordinates
Gcc1 golgi coiled coil 1 Intron
mRNA-UTR
Rr399587 regulatory region 399587 1988 bp downstream
Rr627380 regulatory region 627380 1689 bp distal
Rr627381 regulatory region 627381 1980 bp distal
Rr627382 regulatory region 627382 333 bp distal
Rr627383 regulatory region 627383 228 bp proximal
Tssr55189 transcription start site region 55189 366 bp downstream
Tssr55190 transcription start site region 55190 263 bp downstream
Tssr55191 transcription start site region 55191 434 bp upstream
Tssr55192 transcription start site region 55192 669 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
03/18/2025
MGI 6.24
The Jackson Laboratory