rs251442552 SNP Detail

Summary

• ID
  rs251442552
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:110361449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCCGGGA CGGACGCTGT
  CCAGGGAGGG GCAGCGGTGG CTCCCCTCCA GCTCCGGGAC CCGCCTCCAA CACTCGGCCC
  CGGGACTTAT TGTTCCGGGA GGCCGCAGGC TAGGCCTGGC CTGGCCGGCG GGTTGTACCC
  CGCCCCTGCC AGGGTCGGTG GTGCTGGCGC GCCGACTGGC GGCCGGTGGG CTGCCCTGTG
  Y
  GTGTCTCTTT AAGGGGCTGG GCCTGCAAGG CTGCAGGGCG GGCGGGGTGC GCGTCGCTTC
  GGGAGTGAGT GTGTGAGGGT GAGAGCGGCG GGCGGGCGGT TGCTGGAGGG AGGGAGGGAG
  GGAGGGAGCG AGCGAGAGAG CGAGAGAGCG GGCGGGCGGG CCAGCCAGCC AGCCAGCGAC
  GCCGGCCGCC CCTGCCGCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378905106	MGP_WTSI_9_110434885	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251442552					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378905106	MGP_WTSI_9_110434885	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110361449 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi22381	CpG island 22381			within coordinates
Gm69936	predicted gene, 69936			24 bp upstream
Rr687129	regulatory region 687129			1304 bp distal
Rr687130	regulatory region 687130			35 bp distal
Rr687131	regulatory region 687131			14 bp distal
Rr687132	regulatory region 687132			within coordinates
Rr687133	regulatory region 687133			227 bp proximal
Rr687134	regulatory region 687134			467 bp proximal
Rr687135	regulatory region 687135			696 bp proximal
Setd2	SET domain containing 2			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr3033	transcription start site region 3033			312 bp upstream
Tssr87391	transcription start site region 87391			57 bp upstream
Tssr87392	transcription start site region 87392			120 bp upstream
Tssr87393	transcription start site region 87393			226 bp upstream
Tssr87394	transcription start site region 87394			261 bp upstream
Tssr91630	transcription start site region 91630			19 bp upstream
Tssr91631	transcription start site region 91631			394 bp downstream
Tssr91632	transcription start site region 91632			399 bp downstream
Tssr91633	transcription start site region 91633			427 bp downstream
Tssr91634	transcription start site region 91634			451 bp downstream
Tssr91635	transcription start site region 91635			537 bp downstream
Tssr91636	transcription start site region 91636			563 bp downstream