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rs251458491 SNP Detail
Summary
  • ID
    rs251458491
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr5:91052851 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTAAGGCTTC CCGATGAAGA
AGAGCTGGGG TTTCCAGTGA GAGGCTTGAA ATTCAGGTGT AGGCTCTCGC TCTTATCCTG
ACTGAGTTCA GTGAAAAAGC AATAGGTATT GTTCTTGTTT ACAACGTACG CGAAGTCATG
CCTTGACATT TTTACTCTTA ACATCATTTG GAAAGGTTCA AGCTGGTACA ATTGTAACGC
Y
AGCTCTACTA TTCTAGTTTC AAAGCGCCCA GAGTGTTTAT TGCTGGAAAG TCCAGCAATA
GGTAGCAGGT CCCTTGTGGA GGCTAGAGAT GGTTTCGTTT GGAGAGTAAA CCAAGGTCCA
GGATGAAGTC AAAAGAAGGG GGCTCTGCAA CCCGCCTTTA AGATACCCAC TAACAGCAAC
CATTTTCTCA TCACAGAGGC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss365847512 MGP_WTSI_5_91334018 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs251458491 SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss365847512 MGP_WTSI_5_91334018 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:91052851 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cxcl2 C-X-C motif chemokine ligand 2 within coordinates
Gm73232 predicted gene, 73232 1788 bp upstream
Tssr47224 transcription start site region 47224 1283 bp downstream
Tssr47225 transcription start site region 47225 1181 bp downstream
Tssr47226 transcription start site region 47226 1112 bp downstream
Tssr47227 transcription start site region 47227 918 bp downstream
Tssr47228 transcription start site region 47228 855 bp downstream
Tssr47229 transcription start site region 47229 834 bp downstream
Tssr47230 transcription start site region 47230 809 bp downstream
Tssr47231 transcription start site region 47231 779 bp downstream
Tssr47232 transcription start site region 47232 632 bp downstream
Tssr47233 transcription start site region 47233 582 bp downstream
Tssr47234 transcription start site region 47234 547 bp downstream
Tssr47235 transcription start site region 47235 196 bp upstream
Tssr47236 transcription start site region 47236 216 bp upstream
Tssr47237 transcription start site region 47237 265 bp upstream
Tssr47238 transcription start site region 47238 271 bp upstream
Tssr47239 transcription start site region 47239 331 bp upstream
Tssr47240 transcription start site region 47240 343 bp upstream
Tssr47241 transcription start site region 47241 358 bp upstream
Tssr47242 transcription start site region 47242 395 bp upstream
Tssr47243 transcription start site region 47243 418 bp upstream
Tssr47244 transcription start site region 47244 452 bp upstream
Tssr47245 transcription start site region 47245 472 bp upstream
Tssr47246 transcription start site region 47246 523 bp upstream
Tssr47247 transcription start site region 47247 567 bp upstream
Tssr47248 transcription start site region 47248 630 bp upstream
Tssr47249 transcription start site region 47249 700 bp upstream
Tssr47250 transcription start site region 47250 838 bp upstream
Tssr47251 transcription start site region 47251 902 bp upstream
Tssr47252 transcription start site region 47252 954 bp upstream
Tssr51810 transcription start site region 51810 1849 bp upstream
Tssr51811 transcription start site region 51811 1795 bp upstream
Tssr51812 transcription start site region 51812 765 bp upstream
Tssr51813 transcription start site region 51813 748 bp upstream
Tssr51814 transcription start site region 51814 215 bp downstream
Tssr51815 transcription start site region 51815 249 bp downstream
Tssr51816 transcription start site region 51816 283 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory