rs251462041 SNP Detail

Summary

• ID
  rs251462041
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156767108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCTT CGCCCGCGGC TCCGAGGCAA
  K
  CGCTCGCCCA ACCGAGCAGT CGGCG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss639279461	FVB_NJ_1_158869669	EVA_MGPV3	EVA_MGPV3	f	SNP	T	G	G	T	G	G	T	G	T	T	T	G	G	G	G	G	G	G	T	G	G	G	T	T	G	G	G	T	T	G	T	T	G	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251462041					SNP	T	G	G	T	G	G	T	G	T	T	T	G	G	G	G	G	G	G	T	G	G	G	T	T	G	G	G	T	T	G	T	T	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss639279461	FVB_NJ_1_158869669	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156767108 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930439D14Rik	RIKEN cDNA 4930439D14 gene			within coordinates
Cpgi904	CpG island 904			within coordinates
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr367037	regulatory region 367037			539 bp downstream
Rr421284	regulatory region 421284			1751 bp distal
Rr421285	regulatory region 421285			731 bp distal
Rr421286	regulatory region 421286			569 bp distal
Rr421287	regulatory region 421287			162 bp distal
Rr421288	regulatory region 421288			215 bp distal
Rr421289	regulatory region 421289			within coordinates
Rr421290	regulatory region 421290			225 bp proximal
Rr421291	regulatory region 421291			281 bp proximal
Rr421292	regulatory region 421292			1263 bp proximal
Tssr9581	transcription start site region 9581			119 bp upstream
Tssr14474	transcription start site region 14474			1696 bp upstream
Tssr14475	transcription start site region 14475			729 bp upstream
Tssr14476	transcription start site region 14476			685 bp upstream
Tssr14477	transcription start site region 14477			within coordinates
Tssr14478	transcription start site region 14478			15 bp downstream
Tssr14479	transcription start site region 14479			90 bp downstream
Tssr14480	transcription start site region 14480			488 bp downstream