rs251491623 SNP Detail

Summary

• ID
  rs251491623
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:4262918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTG AGGTAATTGA AAACAAATTT
  C
  TTCCCAACCC CCCCACCCCC CCACC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325715573	CHEV_19_4212864	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251491623					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:4262918 () rs orientation: forward

Symbol	Name	Function Class
Clcf1	cardiotrophin-like cytokine factor 1	1561 bp upstream
Cpgi10392	CpG island 10392	1290 bp proximal
Gm45928	predicted gene, 45928	1493 bp upstream
Gm59210	predicted gene, 59210	within coordinates
Rr358111	regulatory region 358111	318 bp distal
Rr363316	regulatory region 363316	within coordinates
Rr405789	regulatory region 405789	1301 bp upstream
Tssr154300	transcription start site region 154300	1487 bp upstream
Tssr154301	transcription start site region 154301	1503 bp upstream
Tssr154302	transcription start site region 154302	1519 bp upstream
Tssr154303	transcription start site region 154303	1552 bp upstream