rs251500963 SNP Detail

Summary

• ID
  rs251500963
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:104196666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATACGTTTA TGTGTATGTA
  TTCACTCCTA TCTCCAGTGT GATACACCTA TATGTATAGA ATTTTCTAAA AATAAGTGAA
  TAAAAACATA TTAAAAACAA TTTTGTGACT AACAATGGAG GGAAATCCAG GGCACAGGAG
  TTAGAATTTT GTAGTTAGAA TTTGTGATTT ACGTAGTTTC AAAGATCTTT ATTAGTAAAA
  M
  CTGGAAAGTC AGGTTTCCGT TTCTCAACAG GTTTTGTCAG TGACATAAGT TTGTTCATGT
  GCTCACATGT AACATGTGTG ACCCAAAAAT TAAGCTGAGG TGCAACAGGA AATATTAGAA
  TTATTTCCAA AGCAAGGATT TGTGTGGGTC AGTTGAGTGG GCAGTATTGC CAGCACTTAG
  GAGAGTGACT TGCAGGCGTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366114261	MGP_WTSI_5_104477819	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251500963					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366114261	MGP_WTSI_5_104477819	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:104196666 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16142	CpG island 16142	1248 bp distal
Gm43545	predicted gene 43545	1403 bp upstream
Gm52783	predicted gene, 52783	1690 bp downstream
Mir5619	microRNA 5619	737 bp downstream
Nudt9	nudix hydrolase 9	Intron
Rr616018	regulatory region 616018	1921 bp distal
Rr616019	regulatory region 616019	305 bp distal
Tssr47617	transcription start site region 47617	1990 bp downstream
Tssr47618	transcription start site region 47618	1901 bp downstream
Tssr47619	transcription start site region 47619	1886 bp downstream
Tssr47620	transcription start site region 47620	1825 bp downstream
Tssr47621	transcription start site region 47621	1756 bp downstream
Tssr47622	transcription start site region 47622	1727 bp downstream