rs251501307 SNP Detail

Summary

• ID
  rs251501307
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110076211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCCTGCT TGATTTGTAT
  GATGACTTCA CCCCTTTTGA TGAGTCTGAT TTCTACCCCA CCACATCCTT CTATGATGAT
  TTGGAAGAGG AGGAAGAAGA GGAGGAGGAT AAGGATACAG TAGGAGGTGG AGACCTGGAA
  GATGAAAACG ACCTTCTCCT GCCCTCTCAA AAGCCTGGTG TGGGGCCTGG GACAGGACAG
  Y
  CCACCAACCG GTGGCATGCT GTTCCCCCAC AGCATACTCT GGGGATGGTA CCTGGCAGCA
  GCATCTCTCT TAGGCCCCGC CCCGGAGATC CAGGCAAGGA CCTGGCCTCA GGAGAAAATG
  GCACAGAGTG CCGAGTTGGC TTCGTCAGGC ACAATGGCTC CTGCCGGTCA GTCTGTGACC
  TCTTTCCGAG TTACTGTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378898923	MGP_WTSI_9_110149647	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251501307					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378898923	MGP_WTSI_9_110149647	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110076211 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22373	CpG island 22373	565 bp distal
Cspg5	chondroitin sulfate proteoglycan 5	within coordinates
Rr383903	regulatory region 383903	1841 bp upstream
Rr687076	regulatory region 687076	1602 bp distal
Rr687077	regulatory region 687077	1068 bp distal
Tssr87334	transcription start site region 87334	1953 bp downstream
Tssr87335	transcription start site region 87335	1726 bp downstream
Tssr87336	transcription start site region 87336	1652 bp downstream
Tssr87337	transcription start site region 87337	1625 bp downstream
Tssr87338	transcription start site region 87338	907 bp downstream
Tssr87339	transcription start site region 87339	117 bp upstream