rs251536861 SNP Detail

Summary

• ID
  rs251536861
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130554695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGGTTAAA GGCGTGTGCC
  ACTAGTACTC GGCTGATGTG TTTATTCTTG TGTCCAGGTG GTGGCTTTTC CCAGCCTCAG
  GTTCTGGGCC TGGGTGCTCC AAATCTGATT CCCCCAACTG CACAGGGGGA TGATCACGTG
  TCCCCTGTGG AGGGGGAAAG GGCTCCGTGA GGAACTCAGC ATGGTGTTTT TGAAGACAGC
  R
  TTGGGACAAG AGCAGGACCC GGAGACCTCA CGTTTCTGTG GCCTGGATCA CTCAGTGCGG
  GTGGGGCAAG GCTCCTCCTG GCTTCTCTGG GCACCAGAGC CAGGGAGCCC ACTCAGTGCC
  TGTCCTAGGC TCTTCCCATC CGATGAAGGC TGCTGTGACA CATTAGCTAT TGTTCCTGCT
  CCTCTAGGGA CACACAGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321318886	CHEV_4_130383299	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251536861					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130554695 () rs orientation: forward

Symbol	Name	Function Class
Gm26716	predicted gene, 26716	1071 bp upstream
Gm69250	predicted gene, 69250	1569 bp upstream
Rr600596	regulatory region 600596	1261 bp proximal
Rr600597	regulatory region 600597	1580 bp proximal
Sdc3	syndecan 3	1066 bp downstream
Tssr39293	transcription start site region 39293	1506 bp downstream
Tssr39294	transcription start site region 39294	1346 bp downstream
Tssr39295	transcription start site region 39295	1181 bp downstream
Tssr39296	transcription start site region 39296	1153 bp downstream