rs251572787 SNP Detail

Summary

• ID
  rs251572787
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136011160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGG AAAAGAGAGA GAGGAAGAAG
  R
  AGGGAGGGAG GGAGGGAGGG AGGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321354899	CHEV_4_135839764	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251572787					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136011160 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15107	CpG island 15107	1971 bp proximal
Rr398613	regulatory region 398613	1396 bp upstream
Rr602339	regulatory region 602339	447 bp distal
Rr602340	regulatory region 602340	within coordinates
Rr602341	regulatory region 602341	1728 bp proximal
Tssr39694	transcription start site region 39694	788 bp upstream
Tssr39695	transcription start site region 39695	809 bp upstream
Tssr39696	transcription start site region 39696	859 bp upstream
Zfp46	zinc finger protein 46	834 bp upstream