rs251572839 SNP Detail

Summary

• ID
  rs251572839
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:140688571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACACCACTG CAAGTAGAGA
  AGGGTTAAAA ATCACAGCCA CCAGCAGAAT AGGAAAGCCC CGCCCTCCTG GCCTCTGCCC
  CGCCCCTCCA CGCTACCCTT CCCTCTCCCG CCCCTCAGAC TCCAGAGGTC ACCTTAGGAA
  CATAGGAAGC CCAGTGGGCA TGCGCCCTAC GGGCCGCTGC TGCACACACG CACTTCCTGT
  R
  CATTGGCTCG GAGAAACCGG AAGCGGCCTT CCACTCGTTG GCGCTTAGGC GGCTAGCGGT
  CCTCAGGGTG AGAGGCCGGC TTCCCACCGC GGTGTTCGAC GGGATGCCGG AGGGGAAGGG
  GTGGGGCTGA CGTCAGGAGC CAAAATGGCG GCGACGGTCG GGGTCTCCTT GAAGCGCGGC
  TTCCCGGCTG CCGTTCTCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363508376	MGP_WTSI_4_140517175	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251572839					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363508376	MGP_WTSI_4_140517175	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140688571 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15201	CpG island 15201	within coordinates
Gm34431	predicted gene, 34431	within coordinates
Gm68270	predicted gene, 68270	10 bp upstream
Rr367768	regulatory region 367768	within coordinates
Rr603592	regulatory region 603592	47 bp distal
Rr603593	regulatory region 603593	65 bp distal
Rr603594	regulatory region 603594	within coordinates
Rr603595	regulatory region 603595	27 bp proximal
Rr603596	regulatory region 603596	1471 bp proximal
Sdhb	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	mRNA-UTR
Tssr40003	transcription start site region 40003	22 bp upstream
Tssr40004	transcription start site region 40004	41 bp upstream
Tssr40005	transcription start site region 40005	112 bp upstream
Tssr40006	transcription start site region 40006	144 bp upstream
Tssr40007	transcription start site region 40007	1934 bp upstream