rs251585333 SNP Detail

Summary

• ID
  rs251585333
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:109723156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGCTGTT CTGGAACCTA
  CTTTGTAGGA ACTAGGAACT CAGAGATCCT CCTGTCTCTG CCTCCCGAGT GCTGGAACTA
  AAGGCGCCCT ACCATGCCCC TCGACATAAG CCTTTTAAAG GGAATCTATT GATTTCCATG
  CAACTTTAGT CTTAAATCTC GAACATCCAG GTGCTTTTGT GCTTTGCTAA TTTTATAGGC
  R
  GACAGGCCCA GGGCACCATC CCCCTTAGTA AGGGGAGGAG TCCAGGGAGG TGGCCTGCAA
  AAGCCTACTT GAGGTGGAGG TGGGGATTTT TTTTTTATGA GAGTGAGTGT TTTTATTTTT
  AGAATGTTAA AAGAGCCTGT TAATTTTTAG CTACTGATAA GAACTTTTTG TGTAGTCACT
  GCAAAAGGTC CATTTTAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322394513	CHEV_7_117267463	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251585333					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109723156 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19571	CpG island 19571	557 bp distal
Rr400541	regulatory region 400541	1876 bp downstream
Rr400542	regulatory region 400542	within coordinates
Rr653190	regulatory region 653190	1893 bp distal
Tssr68487	transcription start site region 68487	1814 bp downstream
Tssr68488	transcription start site region 68488	1654 bp downstream
Tssr68489	transcription start site region 68489	1626 bp downstream
Tssr68490	transcription start site region 68490	1370 bp downstream
Tssr68491	transcription start site region 68491	1171 bp downstream
Tssr74250	transcription start site region 74250	1046 bp upstream
Tssr74251	transcription start site region 74251	1005 bp upstream
Tssr74252	transcription start site region 74252	920 bp upstream
Wee1	WEE 1 homolog 1 (S. pombe)	Intron