rs251592300 SNP Detail

Summary

• ID
  rs251592300
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:97095868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCCTCAA CCTTCAGTAT
  GCTTACATTA TAGGCACAAA CTATACCTAC TTTGAATTTT CTTTTACTTT CCTTTTTCAG
  CTTCTTGAGA CAGGGATTCT CTGTATAGCC CTGGCTGTCC TGGAACTAGC TGTTGACCAG
  GCTGGCCTCG AACTCAGATT TGCCTGTCTC TGCTTTTTTT TTTTTTTTAA ATTGGGGGGG
  A
  GGGGGTCTGA GACAGGGTTT CTCTGTGTAG CCTGGACTGT CCTGCCCTCA AATTTAGAAA
  TCCGCCTGCC TCTCTCTCCC AAGTGCTGGG ATTAAAGGCA TGCGCCACCA CTGCCTGTCT
  GTCTCTCAAC TGCTGGAATT AAAGGTGTGT GCCTCCGCCA CTGCCACCAC CACCACCACC
  ACCACCACCA CCACCACCAC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MOLF/EiJ	NZW/LacJ	PWK/PhJ	SEA/GnJ	SWR/J
ss384386166	MGP_WTSI_11_97066356	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MOLF/EiJ	NZW/LacJ	PWK/PhJ	SEA/GnJ	SWR/J
rs251592300					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384386166	MGP_WTSI_11_97066356	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:97095868 () rs orientation: forward

Symbol	Name	Function Class
Npepps	aminopeptidase puromycin sensitive	800 bp downstream
Rr455696	regulatory region 455696	1057 bp distal
Tssr110404	transcription start site region 110404	1959 bp downstream