rs251596955 SNP Detail

Summary

• ID
  rs251596955
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148990704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTCCCGGAC ACCAAAGCCT TATACCAGGG
  AATTAATGCA CAGCCACTGG GGTTTGATAC TGGCTGTTCT CAGAAAATGT TTGGGGGGGG
  GCCCAGCTAG AATTAGCAAG TTCTTTAAAG ACCTCATTGC CCCACCCCca tacacacaca
  Y
  acacacacac acacacacac acacacacac acaGACGCTG TTTTCTGTGA CTCGGTGTGG
  ATTACTGTTA GAATCAAATG AATCTTTGTG ATTGCTATCT TGCCTCCGAT CACACCACTT
  AGTGCATACA TGTACCTGCT CTAGGGTTAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321720087	CHEV_5_149865470	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251596955					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148990704 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17090	CpG island 17090	235 bp distal
D5Mit287	DNA segment, Chr 5, Massachusetts Institute of Technology 287	within coordinates
Hmgb1	high mobility group box 1	837 bp upstream
Rr124812	regulatory region 124812	within coordinates
Rr378801	regulatory region 378801	1878 bp downstream
Rr399531	regulatory region 399531	583 bp downstream
Tssr1757	transcription start site region 1757	664 bp downstream
Tssr49872	transcription start site region 49872	685 bp downstream
Tssr54619	transcription start site region 54619	1915 bp upstream
Tssr54620	transcription start site region 54620	841 bp upstream
Tssr54621	transcription start site region 54621	823 bp upstream