rs251604203 SNP Detail

Summary

• ID
  rs251604203
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:40964653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCGCCAATC TCGGGCTCCC CACTCCCAGC
  CCCTTTTCCC AAGGCGCCCC AGCACGCCCG GGCCCCCGCC GGATCTACTT GGGTCTCTGA
  GCTCGCGCTC CTCCTCCTCC TCCTCGCCAT AGAGCTAGCA CCcggcggcg gcggtggcgg
  K
  ggcggtaccg gcggcggcgg cggGAGCCCC ATAGACGCCT CTCGCCCTGC GAAAGGGGGA
  AAGGGGAGCT GGAGCGGCGC TCGGCCCAGC GCGGCGACGT CGCTCCTCGC ACGTCCCGCC
  GAGGGCGCGG CCTGATGACG CCGGGCGCCG                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322631352	CHEV_8_41596966	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251604203					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40964653 () rs orientation: forward

Symbol	Name	Function Class
Cnot7	CCR4-NOT transcription complex, subunit 7	within coordinates
Cpgi20281	CpG island 20281	within coordinates
Rr662586	regulatory region 662586	319 bp distal
Rr662587	regulatory region 662587	within coordinates
Tssr2553	transcription start site region 2553	383 bp upstream
Tssr2554	transcription start site region 2554	124 bp downstream
Tssr76955	transcription start site region 76955	168 bp downstream
Tssr76956	transcription start site region 76956	157 bp upstream
Tssr76957	transcription start site region 76957	177 bp upstream
Tssr81046	transcription start site region 81046	1132 bp upstream
Tssr81047	transcription start site region 81047	338 bp upstream
Tssr81048	transcription start site region 81048	315 bp upstream
Tssr81049	transcription start site region 81049	266 bp upstream
Tssr81050	transcription start site region 81050	51 bp downstream
Vps37a	vacuolar protein sorting 37A	171 bp upstream