rs251607876 SNP Detail

Summary

• ID
  rs251607876
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37614396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ttagccagt cagaatcatt tggtgtaagt
  gagaaccagc ttattgggac tgcaaccaaa tcttgggggc tgatatttag catttgaata
  cataatagca ctagaccaac ccccaacaCA CAGGTCCATT CCCTACCCTA acacacacac
  W
  cacacacaca cacacacaca cacacacacT CAAATACATT CAGTTTTTAA AAGAATTACT
  TTGTAGTTAC AAATGATACC AAAAGTAAAG TATTTGAGAT AAGAGAAATT CAAGCATTAA
  GTTACTTTTT AGTGTGTATG TTTTTTACTT                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320710790	CHEV_3_37459169	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251607876					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37614396 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Afg2a	AFG2 AAA ATPase homolog A			Intron
				Noncoding-Transcript-Variant
Rr575505	regulatory region 575505			1130 bp distal
Rr575506	regulatory region 575506			within coordinates