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rs251610124 SNP Detail
Summary
  • ID
    rs251610124
  • Variation Type
    SNP
  • Alleles
    C
Genome Location and Flanking Sequence
  • Location
    Chr9:46142877 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TAAATTTTTA TTAGACTTAT
TTAGTGTGTG TGTGTGTGTG AGTGTGTGTG TGTGTGAGTG TGTGTGTGTG TGTTTTCACG
TGCCACAGAA CATGTGTGGA GATTAGAGGA CAATTTGCAG GTATCTGTTC TCTTTTCCAC
CATATAGGTC CCAAAGATCA AAAACTCAGG TCACCAGGAT TAGTGTAGCG AGCGTCTCTA
C
TAGCTAAGCC ATCTTGCCAG TTCTTGTTTG TATTTATCTA CTAGCTAAGC CATCTTGCCA
GTCCTTGTTT GTATTTATTT TATTTGGAGA CAGTGTCTCC ACTAGCCCAG GCTAGACTCA
GATGAGCTCT GATCTTTCTG CCCCATCTCC CAAGTGCTGG GGGTTTCAAG GATGGTCCAC
CACTGTTACT CTGTGCTGAG                                            

C = C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss377451252 MGP_WTSI_9_46039662 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs251610124 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss377451252 MGP_WTSI_9_46039662 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr9:46142877 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Apoa1 apolipoprotein A-I 1110 bp downstream
Apoc3 apolipoprotein C-III 1471 bp downstream
Cpgi21701 CpG island 21701 1074 bp distal
D9Mit93 DNA segment, Chr 9, Massachusetts Institute of Technology 93 1776 bp proximal
Rr195183 regulatory region 195183 1877 bp distal
Rr206362 regulatory region 206362 476 bp distal
Rr206363 regulatory region 206363 1923 bp proximal
Tssr84847 transcription start site region 84847 1671 bp downstream
Tssr84848 transcription start site region 84848 1593 bp downstream
Tssr84849 transcription start site region 84849 1557 bp downstream
Tssr84850 transcription start site region 84850 1515 bp downstream
Tssr84851 transcription start site region 84851 1480 bp downstream
Tssr84852 transcription start site region 84852 1383 bp downstream
Tssr84853 transcription start site region 84853 1349 bp downstream
Tssr84854 transcription start site region 84854 1336 bp downstream
Tssr84855 transcription start site region 84855 1316 bp downstream
Tssr84856 transcription start site region 84856 1305 bp downstream
Tssr84857 transcription start site region 84857 1183 bp downstream
Tssr84858 transcription start site region 84858 1146 bp downstream
Tssr84859 transcription start site region 84859 1553 bp upstream
Tssr84860 transcription start site region 84860 1692 bp upstream
Tssr84861 transcription start site region 84861 1738 bp upstream
Tssr89313 transcription start site region 89313 1604 bp upstream
Tssr89314 transcription start site region 89314 1576 bp upstream
Tssr89315 transcription start site region 89315 1553 bp upstream
Tssr89316 transcription start site region 89316 1533 bp upstream
Tssr89317 transcription start site region 89317 1524 bp upstream
Tssr89318 transcription start site region 89318 1500 bp upstream
Tssr89319 transcription start site region 89319 1490 bp upstream
Tssr89320 transcription start site region 89320 1477 bp upstream
Tssr89321 transcription start site region 89321 1452 bp upstream
Tssr89322 transcription start site region 89322 1369 bp upstream
Tssr89323 transcription start site region 89323 1317 bp upstream
Tssr89324 transcription start site region 89324 1289 bp upstream
Tssr89325 transcription start site region 89325 1264 bp upstream
Tssr89326 transcription start site region 89326 1230 bp upstream
Tssr89327 transcription start site region 89327 1116 bp upstream
Tssr89328 transcription start site region 89328 1520 bp downstream
Tssr89329 transcription start site region 89329 1591 bp downstream
Tssr89330 transcription start site region 89330 1637 bp downstream
Tssr89331 transcription start site region 89331 1670 bp downstream
Tssr89332 transcription start site region 89332 1745 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory