rs251613406 SNP Detail

Summary

• ID
  rs251613406
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:36568013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTATAACGC ATCAGAAGTT CAGAAAGAGG
  AAAAAATTTC AAATACCATC TGTCTTCCCA GGGCTTAAGT CCTGGAGTTC AAAAACAGTA
  TCAATTGAAT TATGTTTCCC CCTTCCCTTA GCTGTTTAGA ATTTAACGTA ATGCAAAGTG
  S
  TATTCTGATC AAAATCATAT TTCTCATCTC TCCCCTTAAA TAAAAGGGAG GAAAAAAATC
  ATTCCATATA AATGCATTTA CTATACAAAT CTATTTTCAA TTGAATTTGC TGCATGCTCT
  AATTCATCAA AATTAATACA GGTACTTTCT                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323643773	CHEV_11_36490688	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251613406					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:36568013 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2736	CpG island 2736	240 bp proximal
Rr246545	regulatory region 246545	within coordinates
Tenm2	teneurin transmembrane protein 2	within coordinates
Tssr107449	transcription start site region 107449	305 bp downstream
Tssr107450	transcription start site region 107450	495 bp downstream
Tssr107451	transcription start site region 107451	545 bp downstream
Tssr107452	transcription start site region 107452	586 bp downstream
Tssr107453	transcription start site region 107453	632 bp downstream
Tssr107454	transcription start site region 107454	681 bp downstream
Tssr107455	transcription start site region 107455	727 bp downstream
Tssr107456	transcription start site region 107456	764 bp downstream
Tssr107457	transcription start site region 107457	1348 bp downstream