rs251621964 SNP Detail

Summary

• ID
  rs251621964
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28855921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTCCTATT GGCTTGGTCG
  CGCGCCACGC GCACCCTTCA GGTAACTTGT CCAGTGTAAA TTTTATAGCT TGAGGTTTGG
  ATCTACGAGG TCGCAGGAGG CTCGGGTGTC CCTACTGTCC GACTCTCAAG AAAAAAAAAA
  AAAAAAAAAA GCAAAAAGCA ACTTATTTAA CTTTTATACT TTTGGAGGCA GGGTCTCGAT
  W
  TATACATTTA TGTAGCTCAG GCTGGCTTCT TAGTCCTGCT TCCTCCTTCT GTTTGCTGGT
  TGACAGGCGT GTGACACGCC CAGCTGCCCT TTGTTCTTAG TGCACCCCAG ACCGAAAGTC
  CCATCCGACT TGTTTTTCTT CCACTTTAGG ATTAGATTTT CAGCACGTCT TCACATCCAC
  TCTCCCACCT CAGCCAGACC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370876376	MGP_WTSI_7_29941515	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251621964					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370876376	MGP_WTSI_7_29941515	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28855921 () rs orientation: forward

Symbol	Name	Function Class
1110035H17Rik	RIKEN cDNA 1110035H17 gene	within coordinates
Cpgi18740	CpG island 18740	within coordinates
Fam98c	family with sequence similarity 98, member C	268 bp upstream
Gm73440	predicted gene, 73440	within coordinates
Rr400219	regulatory region 400219	84 bp downstream
Rr644491	regulatory region 644491	428 bp distal
Rr644492	regulatory region 644492	773 bp distal
Rr644493	regulatory region 644493	within coordinates
Rr644494	regulatory region 644494	279 bp distal
Rr644495	regulatory region 644495	154 bp distal
Rr644496	regulatory region 644496	814 bp proximal
Tssr65599	transcription start site region 65599	828 bp downstream
Tssr65600	transcription start site region 65600	805 bp downstream
Tssr65601	transcription start site region 65601	742 bp downstream
Tssr71610	transcription start site region 71610	880 bp upstream
Tssr71611	transcription start site region 71611	865 bp upstream
Tssr71612	transcription start site region 71612	766 bp upstream
Tssr71613	transcription start site region 71613	540 bp upstream
Tssr71614	transcription start site region 71614	501 bp upstream
Tssr71615	transcription start site region 71615	286 bp upstream