rs251628689 SNP Detail

Summary

• ID
  rs251628689
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113420331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGCCTGA GAACTCCTTA
  ACATTTTTAA AGATTTTTAT TTTTAATTTC GTGTGTGTGT GTGTGTGTGT GTGTATTTGT
  GCACGTGAGA GCAACTGCTC GCAGAATCCA GTAGAGGGCG TTGGAGCTGG AGTTACACAT
  GGCATTTGGA GTCTACCCGA GGTTGGTGCT GAGAGCCAAG CCCAGAAAGG TGGCAAGCCA
  Y
  GTCTCTAACC ACACGTCAGA AGTGATTTTG GAAGCTAGAG TTGTGGTTCA TGAACCCAAA
  CCGCCTCCAC TGCAGCGAGC CTACTCTCCA GCTCCAACTC GGGTTATTTC CAATTGGAGT
  CTCAGTTTTC ACATTTTTAG AGGGAGAAAA TTTCATGATT TTTAGGTTTT GGTGAGGAAT
  TAGCAAGTCG TTTGTGTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321910887	CHEV_6_113393364	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251628689					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113420331 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17844	CpG island 17844	262 bp distal
Jagn1	jagunal homolog 1	within coordinates
Rr132170	regulatory region 132170	1731 bp distal
Rr145547	regulatory region 145547	within coordinates
Rr399832	regulatory region 399832	725 bp downstream
Tssr58212	transcription start site region 58212	743 bp downstream
Tssr58213	transcription start site region 58213	735 bp downstream