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rs251656938 SNP Detail
Summary
  • ID
    rs251656938
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44127639 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TCCTC TAACTCTTCA TCTTTCTCCT
Y
TGCCATTCCC CTCTTCTCCT CACTC                                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss641462001 FVB_NJ_7_51733585 EVA_MGPV3 EVA_MGPV3 f SNP T T T C T C C C T T T T C C C C C C T C T C C C C T C C C C T T T C T T C C C T C C T T C C C C C C T C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs251656938 SNP T T T C T C C C T T T T C C C C C C T C T C C C C T C C C C T T T C T T C C C T C C T T C C C C C C T C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss641462001 FVB_NJ_7_51733585 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44127639 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2222 transcription start site region 2222 1861 bp downstream
Tssr2223 transcription start site region 2223 1682 bp downstream
Tssr2224 transcription start site region 2224 836 bp downstream
Tssr2225 transcription start site region 2225 796 bp downstream
Tssr2226 transcription start site region 2226 270 bp downstream
Tssr2227 transcription start site region 2227 796 bp upstream
Tssr2228 transcription start site region 2228 1863 bp upstream
Tssr66210 transcription start site region 66210 1973 bp downstream
Tssr66211 transcription start site region 66211 1933 bp downstream
Tssr66212 transcription start site region 66212 1890 bp downstream
Tssr66213 transcription start site region 66213 1875 bp downstream
Tssr66214 transcription start site region 66214 1843 bp downstream
Tssr66215 transcription start site region 66215 1813 bp downstream
Tssr66216 transcription start site region 66216 1766 bp downstream
Tssr66217 transcription start site region 66217 1694 bp downstream
Tssr66218 transcription start site region 66218 1640 bp downstream
Tssr66219 transcription start site region 66219 1598 bp downstream
Tssr66220 transcription start site region 66220 1564 bp downstream
Tssr66221 transcription start site region 66221 1545 bp downstream
Tssr66222 transcription start site region 66222 1492 bp downstream
Tssr66223 transcription start site region 66223 1425 bp downstream
Tssr66224 transcription start site region 66224 1402 bp downstream
Tssr66225 transcription start site region 66225 1382 bp downstream
Tssr66226 transcription start site region 66226 1369 bp downstream
Tssr66227 transcription start site region 66227 1328 bp downstream
Tssr66228 transcription start site region 66228 1325 bp downstream
Tssr66229 transcription start site region 66229 1312 bp downstream
Tssr66230 transcription start site region 66230 1292 bp downstream
Tssr66231 transcription start site region 66231 1257 bp downstream
Tssr66232 transcription start site region 66232 1245 bp downstream
Tssr66233 transcription start site region 66233 1223 bp downstream
Tssr66234 transcription start site region 66234 1193 bp downstream
Tssr66235 transcription start site region 66235 1173 bp downstream
Tssr66236 transcription start site region 66236 1146 bp downstream
Tssr66237 transcription start site region 66237 1125 bp downstream
Tssr66238 transcription start site region 66238 1106 bp downstream
Tssr66239 transcription start site region 66239 1055 bp downstream
Tssr66240 transcription start site region 66240 974 bp downstream
Tssr66241 transcription start site region 66241 962 bp downstream
Tssr66242 transcription start site region 66242 882 bp downstream
Tssr66243 transcription start site region 66243 868 bp downstream
Tssr66244 transcription start site region 66244 817 bp downstream
Tssr66245 transcription start site region 66245 755 bp downstream
Tssr66246 transcription start site region 66246 727 bp downstream
Tssr66247 transcription start site region 66247 680 bp downstream
Tssr66248 transcription start site region 66248 639 bp downstream
Tssr66249 transcription start site region 66249 616 bp downstream
Tssr66250 transcription start site region 66250 597 bp downstream
Tssr66251 transcription start site region 66251 572 bp downstream
Tssr66252 transcription start site region 66252 541 bp downstream
Tssr66253 transcription start site region 66253 513 bp downstream
Tssr66254 transcription start site region 66254 465 bp downstream
Tssr66255 transcription start site region 66255 438 bp downstream
Tssr66256 transcription start site region 66256 389 bp downstream
Tssr66257 transcription start site region 66257 378 bp downstream
Tssr66258 transcription start site region 66258 335 bp downstream
Tssr66259 transcription start site region 66259 299 bp downstream
Tssr66260 transcription start site region 66260 192 bp downstream
Tssr66261 transcription start site region 66261 171 bp downstream
Tssr66262 transcription start site region 66262 164 bp downstream
Tssr66263 transcription start site region 66263 152 bp downstream
Tssr66264 transcription start site region 66264 128 bp downstream
Tssr66265 transcription start site region 66265 85 bp downstream
Tssr66266 transcription start site region 66266 68 bp downstream
Tssr66267 transcription start site region 66267 31 bp downstream
Tssr66268 transcription start site region 66268 15 bp downstream
Tssr66269 transcription start site region 66269 within coordinates
Tssr66270 transcription start site region 66270 49 bp upstream
Tssr66271 transcription start site region 66271 67 bp upstream
Tssr66272 transcription start site region 66272 133 bp upstream
Tssr66273 transcription start site region 66273 145 bp upstream
Tssr66274 transcription start site region 66274 160 bp upstream
Tssr66275 transcription start site region 66275 168 bp upstream
Tssr66276 transcription start site region 66276 197 bp upstream
Tssr66277 transcription start site region 66277 205 bp upstream
Tssr66278 transcription start site region 66278 237 bp upstream
Tssr66279 transcription start site region 66279 284 bp upstream
Tssr66280 transcription start site region 66280 323 bp upstream
Tssr66281 transcription start site region 66281 354 bp upstream
Tssr66282 transcription start site region 66282 380 bp upstream
Tssr66283 transcription start site region 66283 394 bp upstream
Tssr66284 transcription start site region 66284 411 bp upstream
Tssr66285 transcription start site region 66285 426 bp upstream
Tssr66286 transcription start site region 66286 463 bp upstream
Tssr66287 transcription start site region 66287 481 bp upstream
Tssr66288 transcription start site region 66288 517 bp upstream
Tssr66289 transcription start site region 66289 565 bp upstream
Tssr66290 transcription start site region 66290 626 bp upstream
Tssr66291 transcription start site region 66291 655 bp upstream
Tssr66292 transcription start site region 66292 693 bp upstream
Tssr66293 transcription start site region 66293 711 bp upstream
Tssr66294 transcription start site region 66294 732 bp upstream
Tssr66295 transcription start site region 66295 1017 bp upstream
Tssr66296 transcription start site region 66296 1150 bp upstream
Tssr66297 transcription start site region 66297 1193 bp upstream
Tssr66298 transcription start site region 66298 1218 bp upstream
Tssr66299 transcription start site region 66299 1287 bp upstream
Tssr66300 transcription start site region 66300 1294 bp upstream
Tssr66301 transcription start site region 66301 1318 bp upstream
Tssr66302 transcription start site region 66302 1332 bp upstream
Tssr66303 transcription start site region 66303 1373 bp upstream
Tssr66304 transcription start site region 66304 1381 bp upstream
Tssr66305 transcription start site region 66305 1391 bp upstream
Tssr66306 transcription start site region 66306 1425 bp upstream
Tssr66307 transcription start site region 66307 1482 bp upstream
Tssr66308 transcription start site region 66308 1535 bp upstream
Tssr66309 transcription start site region 66309 1556 bp upstream
Tssr66310 transcription start site region 66310 1594 bp upstream
Tssr66311 transcription start site region 66311 1671 bp upstream
Tssr66312 transcription start site region 66312 1687 bp upstream
Tssr66313 transcription start site region 66313 1708 bp upstream
Tssr66314 transcription start site region 66314 1716 bp upstream
Tssr66315 transcription start site region 66315 1736 bp upstream
Tssr66316 transcription start site region 66316 1795 bp upstream
Tssr66317 transcription start site region 66317 1807 bp upstream
Tssr66318 transcription start site region 66318 1852 bp upstream
Tssr66319 transcription start site region 66319 1875 bp upstream
Tssr66320 transcription start site region 66320 1902 bp upstream
Tssr66321 transcription start site region 66321 1920 bp upstream
Tssr66322 transcription start site region 66322 1940 bp upstream
Tssr66323 transcription start site region 66323 1986 bp upstream
Tssr72199 transcription start site region 72199 732 bp upstream
Tssr72200 transcription start site region 72200 214 bp downstream
Tssr72201 transcription start site region 72201 715 bp downstream
Tssr72202 transcription start site region 72202 1578 bp downstream
Tssr72203 transcription start site region 72203 1964 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory